RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 OR51J1Q9H342 316 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 SLCO1B3Q9NPD5 702 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 C19orf12Q9NSK7 152 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 SLC25A37Q9NYZ2 338 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF225Q9UK10 706 aa3.09□□□□□ -1.91
LINC00540-201ENST00000611481 TRAV36DV7A0A075B6V5 113 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 IGKV1D-8A0A087WSZ0 117 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 A6NDN8 102 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 LINC01619G3V211 115 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 SLC2A10O95528 541 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 HPRT1P00492 218 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 RENP00797 406 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 PGA4P0DJD7 388 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 PGA3P0DJD8 388 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 P0DMU3 169 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 FAM231AP0DMU4 169 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 FAM231CP0DMU5 169 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 SUB1P53999 127 aaKnown RBP eCLIP3.08□□□□□ -1.92
LINC00540-201ENST00000611481 CAV3P56539 151 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 RPL32P62910 135 aaKnown RBP3.08□□□□□ -1.92
LINC00540-201ENST00000611481 PAFAH1B2P68402 229 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 HPCAP84074 193 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 RUNX1Q01196 453 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF92Q03936 586 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 FUT5Q11128 374 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 SNCBQ16143 134 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 C17orf58Q2M2W7 97 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 COX19Q49B96 90 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 Q6ZRP5 223 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF767PQ75MW2 155 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 NOTCH2NLQ7Z3S9 236 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 C6orf120Q7Z4R8 191 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 OR13D1Q8NGV5 346 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 RNASEH2CQ8TDP1 164 aaKnown RBP3.08□□□□□ -1.92
LINC00540-201ENST00000611481 SLC7A6Q92536 515 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 RASL10AQ92737 203 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 ROPN1LQ96C74 230 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 GAFA1Q96PS6 74 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 GPR22Q99680 433 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 NICN1Q9BSH3 213 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 ADAT1Q9BUB4 502 aaKnown RBP3.08□□□□□ -1.92
LINC00540-201ENST00000611481 OR51V1Q9H2C8 321 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 PLEKHJ1Q9NW61 149 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 IMPAD1Q9NX62 359 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 Q9UF83 564 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 GUCA1BQ9UMX6 200 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 VSIG4Q9Y279 399 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 UGT2A1Q9Y4X1 527 aa3.08□□□□□ -1.92
LINC00540-201ENST00000611481 IGKV1D-42A0A075B6H8 117 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 IZUMO1RA6ND01 250 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 MPTX1A8MV57 137 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 OR11H12B2RN74 326 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 LRRN3E7EW58 273 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 NME4O00746 187 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 C6orf47O95873 294 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 GCGP01275 180 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 IFNA10P01566 189 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 IGHG2P01859 326 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 ORM1P02763 201 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 RPS17P08708 135 aaKnown RBP3.07□□□□□ -1.92
LINC00540-201ENST00000611481 CD7P09564 240 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 CTXN2P0C2S0 81 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF823P16415 610 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 PSMB8P28062 276 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 GNRHRP30968 328 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 GPX4P36969 197 aaPredicted RBP3.07□□□□□ -1.92
LINC00540-201ENST00000611481 HCCSP53701 268 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 NDUFV3P56181 108 aaKnown RBP3.07□□□□□ -1.92
LINC00540-201ENST00000611481 ACTBP60709 375 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 PCBD1P61457 104 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 RPL18AQ02543 176 aaKnown RBP3.07□□□□□ -1.92
LINC00540-201ENST00000611481 C2orf54Q08AI8 447 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 ASAH1Q13510 395 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 CASP8Q14790 479 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 IMPG1Q17R60 797 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 DEFB135Q30KP9 77 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF678Q5SXM1 525 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 MINOS1Q5TGZ0 78 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 FAM27BQ5VT28 67 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 UBE2UQ5VVX9 321 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 LCN12Q6JVE5 192 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 UFSP1Q6NVU6 142 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 TNFAIP8L2Q6P589 184 aaPredicted RBP3.07□□□□□ -1.92
LINC00540-201ENST00000611481 ZNF440Q8IYI8 595 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 RDH10Q8IZV5 341 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 C5orf56Q8N8D9 126 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 CCDC71LQ8N9Z2 235 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 LFNGQ8NES3 379 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 OR11H6Q8NGC7 330 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 OR4M1Q8NGD0 313 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 OR52L1Q8NGH7 329 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 OR5L1Q8NGL2 311 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 OR10R2Q8NGX6 335 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 SFXN5Q8TD22 340 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 OR5P2Q8WZ92 322 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 C12orf43Q96C57 262 aaKnown RBP3.07□□□□□ -1.92
LINC00540-201ENST00000611481 CMTM5Q96DZ9 223 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 SLC35G5Q96KT7 338 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 UBE2E2Q96LR5 201 aa3.07□□□□□ -1.92
LINC00540-201ENST00000611481 LINC00479Q96M42 142 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms