RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 PROP1O75360 226 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 C1QBP02746 253 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 THBS3P49746 956 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 ZNF137PP52743 207 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 PRRX1P54821 245 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 OR2B11Q5JQS5 317 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 GGNBP1Q5YKI7 109 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 ZNF833PQ6ZTB9 187 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 LYZL2Q7Z4W2 148 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 SELENOHQ8IZQ5 122 aaKnown RBP9.17□□□□□ -0.94
LINC00539-204ENST00000608957 ADTRPQ96IZ2 230 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 SLC25A33Q9BSK2 321 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 PRSS22Q9GZN4 317 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 FAM212BQ9NTI7 297 aaPredicted RBP9.17□□□□□ -0.94
LINC00539-204ENST00000608957 TMED3Q9Y3Q3 217 aa9.17□□□□□ -0.94
LINC00539-204ENST00000608957 C13orf42A0A1B0GVH6 325 aa9.16□□□□□ -0.94
LINC00539-204ENST00000608957 MPTX1A8MV57 137 aa9.16□□□□□ -0.94
LINC00539-204ENST00000608957 RPA2P15927 270 aa9.16□□□□□ -0.94
LINC00539-204ENST00000608957 KIR2DS2P43631 304 aa9.16□□□□□ -0.94
LINC00539-204ENST00000608957 EIF2B2P49770 351 aaKnown RBP9.16□□□□□ -0.94
LINC00539-204ENST00000608957 DEFA6Q01524 100 aa9.16□□□□□ -0.94
LINC00539-204ENST00000608957 ZNF585BQ52M93 769 aa9.16□□□□□ -0.94
LINC00539-204ENST00000608957 SPAG16Q8N0X2 631 aa9.16□□□□□ -0.94
LINC00539-204ENST00000608957 DRAXINQ8NBI3 349 aaPredicted RBP9.16□□□□□ -0.94
LINC00539-204ENST00000608957 OR2T35Q8NGX2 323 aa9.16□□□□□ -0.94
LINC00539-204ENST00000608957 RBMXL1Q96E39 390 aaKnown RBP9.16□□□□□ -0.94
LINC00539-204ENST00000608957 WDR89Q96FK6 387 aaPredicted RBP9.16□□□□□ -0.94
LINC00539-204ENST00000608957 RBM14Q96PK6 669 aaKnown RBP9.16□□□□□ -0.94
LINC00539-204ENST00000608957 NMES1Q9C002 83 aa9.16□□□□□ -0.94
LINC00539-204ENST00000608957 AMMECR1Q9Y4X0 333 aaPredicted RBP9.16□□□□□ -0.94
LINC00539-204ENST00000608957 OOSP1A8MZH6 123 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 G3V3Q6 166 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 RBFOX2O43251 390 aaKnown RBP eCLIP9.15□□□□□ -0.94
LINC00539-204ENST00000608957 RAMP3O60896 148 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 FBXO24O75426 580 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 OR2F2O95006 317 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 IGKV1-39P01597 117 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 IGKV1D-39P04432 117 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 SNRNP70P08621 437 aaKnown RBP9.15□□□□□ -0.94
LINC00539-204ENST00000608957 BRS3P32247 399 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 CEACAM3P40198 252 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 LPAR6P43657 344 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 VDAC2P45880 294 aaPredicted RBP9.15□□□□□ -0.94
LINC00539-204ENST00000608957 LINC00205P59089 165 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 CYCSP99999 105 aaKnown RBP9.15□□□□□ -0.94
LINC00539-204ENST00000608957 ZNF816Q0VGE8 651 aaPredicted RBP9.15□□□□□ -0.94
LINC00539-204ENST00000608957 C10orf99Q6UWK7 81 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 C16orf82Q7Z2V1 217 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 C1QL4Q86Z23 238 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 ZNF383Q8NA42 475 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 RNASE11Q8TAA1 199 aaKnown RBP9.15□□□□□ -0.94
LINC00539-204ENST00000608957 CD300LFQ8TDQ1 290 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 DDB2Q92466 427 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 RPEQ96AT9 228 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 SEC22AQ96IW7 307 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 OR10C1Q96KK4 312 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 C2orf50Q96LR7 162 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 SPIN2AQ99865 258 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 CITED2Q99967 270 aaPredicted RBP9.15□□□□□ -0.94
LINC00539-204ENST00000608957 SPIN2BQ9BPZ2 258 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 MRPL20Q9BYC9 149 aaKnown RBP9.15□□□□□ -0.94
LINC00539-204ENST00000608957 COMMD9Q9P000 198 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 PRELID3BQ9Y3B1 194 aa9.15□□□□□ -0.94
LINC00539-204ENST00000608957 PRKDCP78527 4128 aaKnown RBP9.15□□□□□ -0.95
LINC00539-204ENST00000608957 FCGR3BO75015 233 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 S1PR2O95136 353 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 CT45A6P0DMU7 189 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 CT45A5P0DMU8 189 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 CT45A7P0DMV0 189 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 VDAC1P21796 283 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 AKR1C2P52895 323 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 BRWD1-AS2P59051 145 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 IAH1Q2TAA2 248 aaPredicted RBP9.14□□□□□ -0.95
LINC00539-204ENST00000608957 NSUN5P1Q3KNT7 163 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 NMSQ5H8A3 153 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 TCTEX1D4Q5JR98 221 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 NOXA1Q86UR1 476 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 THNSL2Q86YJ6 484 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 ZBTB8BQ8NAP8 495 aaPredicted RBP9.14□□□□□ -0.95
LINC00539-204ENST00000608957 OR4S2Q8NH73 311 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 LSM10Q969L4 123 aaKnown RBP9.14□□□□□ -0.95
LINC00539-204ENST00000608957 ST6GALNAC6Q969X2 333 aa9.14□□□□□ -0.95
LINC00539-204ENST00000608957 NOTCH3Q9UM47 2321 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 TRAV14DV4A0A0A6YYC5 116 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 A0A0G2JRQ6 117 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 TXNL1O43396 289 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 ATG12O94817 140 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 HPRT1P00492 218 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 IGKV1-5P01602 117 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 APOA2P02652 100 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 REG1BP48304 166 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 NKX2-5P52952 324 aaPredicted RBP9.13□□□□□ -0.95
LINC00539-204ENST00000608957 FGL1Q08830 312 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 RTL8BQ17RB0 113 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 LRRC37A5PQ49AS3 106 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 THOC7Q6I9Y2 204 aaKnown RBP9.13□□□□□ -0.95
LINC00539-204ENST00000608957 CCDC144NLQ6NUI1 221 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 TGIF2LXQ8IUE1 241 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 PPP1R1CQ8WVI7 109 aa9.13□□□□□ -0.95
LINC00539-204ENST00000608957 HYLS1Q96M11 299 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms