RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ZNF182P17025 639 aaPredicted RBP4.74□□□□□ -1.65
CUX1-220ENST00000607092 GADD45AP24522 165 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 MAS1LP35410 378 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 CMC4P56277 68 aaPredicted RBP4.74□□□□□ -1.65
CUX1-220ENST00000607092 TRAM1Q15629 374 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 ACSM3Q53FZ2 586 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 HSD17B12Q53GQ0 312 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 RBPMS2Q6ZRY4 209 aaKnown RBP4.74□□□□□ -1.65
CUX1-220ENST00000607092 KIR2DL5AQ8N109 375 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 FAM89BQ8N5H3 189 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 TTC9CQ8N5M4 171 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 STPG3Q8N7X2 389 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 ZNF485Q8NCK3 441 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 KIR2DL5BQ8NHK3 375 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 DYNC2LI1Q8TCX1 351 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 BORCS5Q969J3 196 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 CXorf58Q96LI9 332 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 FAM110AQ9BQ89 295 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 GINS4Q9BRT9 223 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 MFFQ9GZY8 342 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 NAA50Q9GZZ1 169 aaKnown RBP4.74□□□□□ -1.65
CUX1-220ENST00000607092 OR2D2Q9H210 308 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 RETNQ9HD89 108 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 AKIP1Q9NQ31 210 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 THYN1Q9P016 225 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 OR1A1Q9P1Q5 309 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 ZNF230Q9UIE0 474 aaPredicted RBP4.74□□□□□ -1.65
CUX1-220ENST00000607092 AK3Q9UIJ7 227 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 LSM2Q9Y333 95 aaKnown RBP4.74□□□□□ -1.65
CUX1-220ENST00000607092 HERC2O95714 4834 aa4.74□□□□□ -1.65
CUX1-220ENST00000607092 RYR1P21817 5038 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 TRBV7-1A0A0A6YYK4 115 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 IZUMO1RA6ND01 250 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 NPIPB5A8MRT5 1133 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 TMEM14DPA8MWL7 114 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 FABP7O15540 132 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 SPRY2O43597 315 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 PROP1O75360 226 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 IGLV2-23P01705 113 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 TRBV12-3P01733 135 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 SCTP09683 121 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 CTXN2P0C2S0 81 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 CBLN1P23435 193 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 FGF9P31371 208 aaPredicted RBP4.73□□□□□ -1.65
CUX1-220ENST00000607092 TALDO1P37837 337 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 ELLP55199 621 aaPredicted RBP4.73□□□□□ -1.65
CUX1-220ENST00000607092 PJVKQ0ZLH3 352 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 PMS2P11Q13670 270 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 SPCS2Q15005 226 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 CDK10Q15131 360 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 C15orf32Q32M92 178 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 LGALS9CQ6DKI2 356 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 LAMTOR1Q6IAA8 161 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 ZFP41Q8N8Y5 198 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 OR1L6Q8NGR2 347 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 EEF1AKMT3Q96AZ1 226 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 OVOL2Q9BRP0 275 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 DCUN1D5Q9BTE7 237 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 CABLES2Q9BTV7 478 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 NXF2Q9GZY0 626 aaKnown RBP4.73□□□□□ -1.65
CUX1-220ENST00000607092 LPAR5Q9H1C0 372 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 DCSTAMPQ9H295 470 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 MRPL27Q9P0M9 148 aaKnown RBP4.73□□□□□ -1.65
CUX1-220ENST00000607092 CLEC2DQ9UHP7 191 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 SSR3Q9UNL2 185 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 UFC1Q9Y3C8 167 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 FRAS1Q86XX4 4008 aa4.73□□□□□ -1.65
CUX1-220ENST00000607092 A0A075B6Q4 140 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 TRBV6-7A0A0A0MS04 114 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 PNMA8CA0A1B0GUJ8 204 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 TRDV1A0A1B0GX56 115 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 ZNF320A2RRD8 509 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 METTL21EPA6NDL7 271 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 OR4C46A6NHA9 309 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 SLC17A2O00624 439 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 BET1O15155 118 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 CRYZL1O95825 349 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 IFNA4P05014 189 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 HSMCR30P0CW71 290 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 CD37P11049 281 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 DEFA4P12838 97 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 PSMB6P28072 239 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 DUTP33316 252 aaKnown RBP4.72□□□□□ -1.65
CUX1-220ENST00000607092 ADMP35318 185 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 ARL3P36405 182 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 VBP1P61758 197 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 SSBP2P81877 361 aaPredicted RBP4.72□□□□□ -1.65
CUX1-220ENST00000607092 QRFPP83859 136 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 UNC119Q13432 240 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 ZNF846Q147U1 533 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 RAB11BQ15907 218 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 OR10K2Q6IF99 312 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 Q6ZS49 121 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 CEACAM19Q7Z692 300 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 LYG2Q86SG7 212 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 CENPSQ8N2Z9 138 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 OR2C3Q8N628 320 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 UFD1Q92890 307 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 RAB3CQ96E17 227 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 RBMXL1Q96E39 390 aaKnown RBP4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms