RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CD40LGP29965 261 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 TNXAQ16473 311 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 RNASE10Q5GAN6 216 aaKnown RBP12.56□□□□□ -0.4
LSM4-206ENST00000600289 AADACL3Q5VUY0 350 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 LHFPL1Q86WI0 220 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 CMTM1Q8IZ96 169 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 CADM3Q8N126 398 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 POC5Q8NA72 575 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 TMEM229BQ8NBD8 167 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 OR4A5Q8NH83 315 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 SRSF12Q8WXF0 261 aaKnown RBP12.56□□□□□ -0.4
LSM4-206ENST00000600289 DIRAS2Q96HU8 199 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 RSRP1Q9BUV0 290 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 GNB4Q9HAV0 340 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 FAM212BQ9NTI7 297 aaPredicted RBP12.56□□□□□ -0.4
LSM4-206ENST00000600289 BET1LQ9NYM9 111 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 COMMD9Q9P000 198 aa12.56□□□□□ -0.4
LSM4-206ENST00000600289 PGLYRP1O75594 196 aaPredicted RBP12.55□□□□□ -0.4
LSM4-206ENST00000600289 PRB2P02812 416 aaPredicted RBP12.55□□□□□ -0.4
LSM4-206ENST00000600289 IL6RP08887 468 aaPredicted RBP12.55□□□□□ -0.4
LSM4-206ENST00000600289 NQO2P16083 231 aa12.55□□□□□ -0.4
LSM4-206ENST00000600289 F2RP25116 425 aa12.55□□□□□ -0.4
LSM4-206ENST00000600289 TAS2R19P59542 299 aa12.55□□□□□ -0.4
LSM4-206ENST00000600289 DGCR2P98153 550 aa12.55□□□□□ -0.4
LSM4-206ENST00000600289 SLC38A6Q8IZM9 456 aa12.55□□□□□ -0.4
LSM4-206ENST00000600289 OR51H1Q8NH63 302 aa12.55□□□□□ -0.4
LSM4-206ENST00000600289 MCFD2Q8NI22 146 aa12.55□□□□□ -0.4
LSM4-206ENST00000600289 SPIN2AQ99865 258 aa12.55□□□□□ -0.4
LSM4-206ENST00000600289 SPIN2BQ9BPZ2 258 aa12.55□□□□□ -0.4
LSM4-206ENST00000600289 MCRIP2Q9BUT9 160 aaKnown RBP12.55□□□□□ -0.4
LSM4-206ENST00000600289 GPR61Q9BZJ8 451 aa12.55□□□□□ -0.4
LSM4-206ENST00000600289 C6orf62Q9GZU0 229 aaPredicted RBP12.55□□□□□ -0.4
LSM4-206ENST00000600289 RSL24D1Q9UHA3 163 aaKnown RBP12.55□□□□□ -0.4
LSM4-206ENST00000600289 M0QYG6 137 aa12.54□□□□□ -0.4
LSM4-206ENST00000600289 GSTZ1O43708 216 aaPredicted RBP12.54□□□□□ -0.4
LSM4-206ENST00000600289 ACTL6BO94805 426 aa12.54□□□□□ -0.4
LSM4-206ENST00000600289 CD3DP04234 171 aa12.54□□□□□ -0.4
LSM4-206ENST00000600289 RLN1P04808 185 aa12.54□□□□□ -0.4
LSM4-206ENST00000600289 LGALS1P09382 135 aaKnown RBP12.54□□□□□ -0.4
LSM4-206ENST00000600289 IGLL1P15814 213 aa12.54□□□□□ -0.4
LSM4-206ENST00000600289 DEFB136Q30KP8 78 aa12.54□□□□□ -0.4
LSM4-206ENST00000600289 OXLD1Q5BKU9 147 aa12.54□□□□□ -0.4
LSM4-206ENST00000600289 RNASE12Q5GAN4 147 aaKnown RBP12.54□□□□□ -0.4
LSM4-206ENST00000600289 OR4A47Q6IF82 309 aa12.54□□□□□ -0.4
LSM4-206ENST00000600289 VKORC1L1Q8N0U8 176 aa12.54□□□□□ -0.4
LSM4-206ENST00000600289 ZNF486Q96H40 463 aaPredicted RBP12.54□□□□□ -0.4
LSM4-206ENST00000600289 SOSTQ9BQB4 213 aa12.54□□□□□ -0.4
LSM4-206ENST00000600289 TINAGL1Q9GZM7 467 aaPredicted RBP12.54□□□□□ -0.4
LSM4-206ENST00000600289 MSGN1A6NI15 193 aa12.53□□□□□ -0.4
LSM4-206ENST00000600289 IFNA6P05013 189 aa12.53□□□□□ -0.4
LSM4-206ENST00000600289 OR9G9P0C7N8 305 aa12.53□□□□□ -0.4
LSM4-206ENST00000600289 S100GP29377 79 aa12.53□□□□□ -0.4
LSM4-206ENST00000600289 TPPP2P59282 170 aa12.53□□□□□ -0.4
LSM4-206ENST00000600289 IL18Q14116 193 aa12.53□□□□□ -0.4
LSM4-206ENST00000600289 OR11H1Q8NG94 326 aa12.53□□□□□ -0.4
LSM4-206ENST00000600289 DGCR14Q96DF8 476 aaKnown RBP12.53□□□□□ -0.4
LSM4-206ENST00000600289 PHB2Q99623 299 aa12.53□□□□□ -0.4
LSM4-206ENST00000600289 CCDC160A6NGH7 325 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 S1PR2O95136 353 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 TRGV3P03979 118 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 OR8U8P0C7N1 319 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 ZNF735P0CB33 412 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 TNFSF8P32971 234 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 RND3P61587 244 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 RPL8P62917 257 aaKnown RBP12.52□□□□□ -0.41
LSM4-206ENST00000600289 ZNF616Q08AN1 781 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 MEF2DQ14814 521 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 STEAP1BQ6NZ63 245 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 ADAD2Q8NCV1 583 aaKnown RBP12.52□□□□□ -0.41
LSM4-206ENST00000600289 OR1N2Q8NGR9 330 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 DUX3Q96PT4 197 aa12.52□□□□□ -0.41
LSM4-206ENST00000600289 A0A0G2JLM5 398 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 TEX22C9J3V5 150 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 RAB3DO95716 219 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 HLA-GP17693 338 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 PTBP1P26599 531 aaKnown RBP eCLIP12.51□□□□□ -0.41
LSM4-206ENST00000600289 RPL27AP46776 148 aaKnown RBP12.51□□□□□ -0.41
LSM4-206ENST00000600289 ZNF585BQ52M93 769 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 C10orf55Q5SWW7 151 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 REC114Q7Z4M0 266 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 SLC25A42Q86VD7 318 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 TTC9CQ8N5M4 171 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 OR5T1Q8NG75 326 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 CASTOR1Q8WTX7 329 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 MS4A10Q96PG2 267 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 SLC2A9Q9NRM0 540 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 TMEM140Q9NV12 185 aa12.51□□□□□ -0.41
LSM4-206ENST00000600289 DNAH9Q9NYC9 4486 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 MARCH11A6NNE9 402 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 NPIPB5A8MRT5 1133 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 UPK2O00526 184 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 ECI1P42126 302 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 EGFEM1PQ0D2K5 195 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 KLK9Q2XQG4 91 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 PHLDA2Q53GA4 152 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 FOXB2Q5VYV0 432 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 SSX9Q7RTT3 188 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 TBC1D26Q86UD7 250 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 OR4D10Q8NGI6 311 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 TERB2Q8NHR7 220 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms