RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 RPL23AP62750 156 aaKnown RBP12.41□□□□□ -0.42
VRK3-218ENST00000600031 CCL20P78556 96 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 ZBTB34Q8NCN2 500 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 ARHGAP32A7KAX9 2087 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 VPS13CQ709C8 3753 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 DOPEY2Q9Y3R5 2298 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 A0A1W2PPE2 198 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 C22orf46C9J442 243 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 OR2C1O95371 312 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 IGHV2-5P01817 119 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 GPR12P47775 334 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 PAX9P55771 341 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 LINC00205P59089 165 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 TAS2R30P59541 319 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 RPL30P62888 115 aaKnown RBP12.41□□□□□ -0.42
VRK3-218ENST00000600031 MSMO1Q15800 293 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 Q3ZCU0 254 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 ZNF506Q5JVG8 444 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 STX12Q86Y82 276 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 C8orf46Q8TAG6 207 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 RAB40CQ96S21 281 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 ZNRD1Q9P1U0 126 aa12.41□□□□□ -0.42
VRK3-218ENST00000600031 A0A087WWC5 75 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 PPIAL4CA0A0B4J2A2 164 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 hCG_1809904A0A1W2PP81 198 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 A0A1W2PR64 198 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 A0A1W2PRV1 198 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 PPIAL4GP0DN37 164 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 ZNF16P17020 682 aaPredicted RBP12.4□□□□□ -0.42
VRK3-218ENST00000600031 PDLIM4P50479 330 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 ATP5J2P56134 94 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 FABP9Q0Z7S8 132 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 C1orf229Q6ZS94 237 aaPredicted RBP12.4□□□□□ -0.42
VRK3-218ENST00000600031 FAM216AQ8WUB2 273 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 YPEL4Q96NS1 127 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 SSBP3Q9BWW4 388 aaPredicted RBP12.4□□□□□ -0.42
VRK3-218ENST00000600031 RFNGQ9Y644 331 aa12.4□□□□□ -0.42
VRK3-218ENST00000600031 HELZ2Q9BYK8 2649 aaKnown RBP12.4□□□□□ -0.42
VRK3-218ENST00000600031 C17orf98A8MV24 154 aa12.4□□□□□ -0.43
VRK3-218ENST00000600031 SCAF4O95104 1147 aaKnown RBP12.4□□□□□ -0.43
VRK3-218ENST00000600031 IFNA5P01569 189 aa12.4□□□□□ -0.43
VRK3-218ENST00000600031 SERPINE2P07093 398 aa12.4□□□□□ -0.43
VRK3-218ENST00000600031 KRTAP10-9P60411 292 aa12.4□□□□□ -0.43
VRK3-218ENST00000600031 RPL39P5Q59GN2 51 aa12.4□□□□□ -0.43
VRK3-218ENST00000600031 ZNF787Q6DD87 383 aa12.4□□□□□ -0.43
VRK3-218ENST00000600031 TMEM217Q8N7C4 229 aa12.4□□□□□ -0.43
VRK3-218ENST00000600031 LY6G5BQ8NDX9 201 aa12.4□□□□□ -0.43
VRK3-218ENST00000600031 GPR146Q96CH1 333 aa12.4□□□□□ -0.43
VRK3-218ENST00000600031 CENPEQ02224 2701 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 TRAV1-1A0A0B4J248 108 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 H3BQ15 152 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 AP4M1O00189 453 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 IGHV1-8P0DP01 117 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 EPHA1P21709 976 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 RAB7AP51149 207 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 DLX1P56177 255 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 ZNF585BQ52M93 769 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 KHDC3LQ587J8 217 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 SLC25A48Q6ZT89 311 aaKnown RBP12.39□□□□□ -0.43
VRK3-218ENST00000600031 TCTEX1D2Q8WW35 142 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 LSM10Q969L4 123 aaKnown RBP12.39□□□□□ -0.43
VRK3-218ENST00000600031 PERPQ96FX8 193 aa12.39□□□□□ -0.43
VRK3-218ENST00000600031 LINC00473A8K010 186 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 TXNL1O43396 289 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 ICAM4Q14773 271 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 HAGHQ16775 308 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 LYG1Q8N1E2 194 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 CLDND2Q8NHS1 167 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 PSMG3-AS1Q96PY0 264 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 ZNF251Q9BRH9 671 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 LIN7CQ9NUP9 197 aaKnown RBP12.38□□□□□ -0.43
VRK3-218ENST00000600031 WSB1Q9Y6I7 421 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 CSMD2Q7Z408 3487 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 LOC105371242A0A075B767 164 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 SAA2-SAA4A0A096LPE2 208 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 RNF212BA8MTL3 300 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 SAA2P0DJI9 122 aaPredicted RBP12.38□□□□□ -0.43
VRK3-218ENST00000600031 ZFP36P26651 326 aaKnown RBP12.38□□□□□ -0.43
VRK3-218ENST00000600031 BRWD1-AS2P59051 145 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 UBE2KP61086 200 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 RUNX1Q01196 453 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 OR2B11Q5JQS5 317 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 OR10G4Q8NGN3 311 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 NANPQ8TBE9 248 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 GAB2Q9UQC2 676 aa12.38□□□□□ -0.43
VRK3-218ENST00000600031 MED13LQ71F56 2210 aa12.37□□□□□ -0.43
VRK3-218ENST00000600031 A0A0G2JRQ6 117 aa12.37□□□□□ -0.43
VRK3-218ENST00000600031 KIAA1324LA8MWY0 1029 aaPredicted RBP12.37□□□□□ -0.43
VRK3-218ENST00000600031 M0R1X1 148 aa12.37□□□□□ -0.43
VRK3-218ENST00000600031 IGKV1-39P01597 117 aa12.37□□□□□ -0.43
VRK3-218ENST00000600031 IGKV1D-39P04432 117 aa12.37□□□□□ -0.43
VRK3-218ENST00000600031 DUTP33316 252 aaKnown RBP12.37□□□□□ -0.43
VRK3-218ENST00000600031 TAGLN2P37802 199 aaKnown RBP12.37□□□□□ -0.43
VRK3-218ENST00000600031 LMO4P61968 165 aa12.37□□□□□ -0.43
VRK3-218ENST00000600031 ZNF66Q6ZN08 573 aa12.37□□□□□ -0.43
VRK3-218ENST00000600031 ZNF429Q86V71 674 aa12.37□□□□□ -0.43
VRK3-218ENST00000600031 RNASE11Q8TAA1 199 aaKnown RBP12.37□□□□□ -0.43
VRK3-218ENST00000600031 FAM168AQ92567 244 aa12.37□□□□□ -0.43
VRK3-218ENST00000600031 RAB39BQ96DA2 213 aa12.37□□□□□ -0.43
VRK3-218ENST00000600031 TVP23CQ96ET8 276 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms