RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 RAB25P57735 213 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 SSBP2P81877 361 aaPredicted RBP8.66□□□□□ -1.02
LIG1-211ENST00000596457 MRGPRG-AS1Q2M3A8 158 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 SPANXN2Q5MJ10 180 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 CCDC190Q86UF4 302 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 ZNF695Q8IW36 515 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 Q8N402 240 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 MINDY2Q8NBR6 621 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 OR6Q1Q8NGQ2 317 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 TERB2Q8NHR7 220 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 VSTM2AQ8TAG5 236 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 ZFAND1Q8TCF1 268 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 SRSF12Q8WXF0 261 aaKnown RBP8.66□□□□□ -1.02
LIG1-211ENST00000596457 FYTTD1Q96QD9 318 aaKnown RBP8.66□□□□□ -1.02
LIG1-211ENST00000596457 AIFM2Q9BRQ8 373 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 COA4Q9NYJ1 87 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 V9GYH0 126 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 PLXNB1O43157 2135 aa8.66□□□□□ -1.02
LIG1-211ENST00000596457 ANKRD20A5PA0PJZ0 165 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 SOX15O60248 233 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 IGLV1-40P01703 118 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 TRGV3P03979 118 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 MYOD1P15172 320 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 NQO2P16083 231 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 CD33P20138 364 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 PSMB8P28062 276 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 G6PCP35575 357 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 CRIP2P52943 208 aaPredicted RBP8.65□□□□□ -1.02
LIG1-211ENST00000596457 PIGPP57054 158 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 TPPP2P59282 170 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 TAS2R31P59538 309 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 ERVK-16P61578 105 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 DEFB136Q30KP8 78 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 AKIRIN2Q53H80 203 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 C10orf55Q5SWW7 151 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 ZNF57Q68EA5 555 aaPredicted RBP8.65□□□□□ -1.02
LIG1-211ENST00000596457 OR4A47Q6IF82 309 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 LHFPL1Q86WI0 220 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 PUSL1Q8N0Z8 303 aaKnown RBP8.65□□□□□ -1.02
LIG1-211ENST00000596457 TOMM5Q8N4H5 51 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 TCTEX1D1Q8N7M0 179 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 OR51S1Q8NGJ8 323 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 OR13C8Q8NGS7 320 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 TMEM167AQ8TBQ9 72 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 CD300LFQ8TDQ1 290 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 KRTAP17-1Q9BYP8 105 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 SLC2A9Q9NRM0 540 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 COPZ2Q9P299 210 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 ZNF580Q9UK33 172 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 C14orf166Q9Y224 244 aaKnown RBP8.65□□□□□ -1.02
LIG1-211ENST00000596457 RYR3Q15413 4870 aa8.65□□□□□ -1.02
LIG1-211ENST00000596457 KMT2CQ8NEZ4 4911 aaKnown RBP8.65□□□□□ -1.03
LIG1-211ENST00000596457 TRAV3A0A0B4J244 114 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 HMX3A6NHT5 357 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 RBFOX2O43251 390 aaKnown RBP eCLIP8.64□□□□□ -1.03
LIG1-211ENST00000596457 KRASP01116 189 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 IGHV3-11P01762 117 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 RPL27AP46776 148 aaKnown RBP8.64□□□□□ -1.03
LIG1-211ENST00000596457 CDX1P47902 265 aaPredicted RBP8.64□□□□□ -1.03
LIG1-211ENST00000596457 INPP1P49441 399 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 DEFA5Q01523 94 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 ZNF79Q15937 498 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 ZNF585BQ52M93 769 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 C19orf54Q5BKX5 351 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 C1QL4Q86Z23 238 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 ZNF491Q8N8L2 437 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 OR5M8Q8NGP6 311 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 GNB4Q9HAV0 340 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 PLEKHA2Q9HB19 425 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 TMEM140Q9NV12 185 aa8.64□□□□□ -1.03
LIG1-211ENST00000596457 LINC00854A0A1B0GVQ3 168 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 UPK2O00526 184 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 SERPINE2P07093 398 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 PTBP1P26599 531 aaKnown RBP eCLIP8.63□□□□□ -1.03
LIG1-211ENST00000596457 MAS1LP35410 378 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 RPL8P62917 257 aaKnown RBP8.63□□□□□ -1.03
LIG1-211ENST00000596457 SP6Q3SY56 376 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 ASPHD1Q5U4P2 390 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 CCDC71LQ8N9Z2 235 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 OR4A5Q8NH83 315 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 ZNF486Q96H40 463 aaPredicted RBP8.63□□□□□ -1.03
LIG1-211ENST00000596457 RAX2Q96IS3 184 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 PRRT1Q99946 306 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 ALX4Q9H161 411 aaPredicted RBP8.63□□□□□ -1.03
LIG1-211ENST00000596457 BET1LQ9NYM9 111 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 COMMD9Q9P000 198 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 SCP2D1Q9UJQ7 156 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 VSIG4Q9Y279 399 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 NSG2Q9Y328 171 aa8.63□□□□□ -1.03
LIG1-211ENST00000596457 TEX13DA0A0J9YY54 714 aaPredicted RBP8.62□□□□□ -1.03
LIG1-211ENST00000596457 C3orf85A0A1B0GTC6 90 aa8.62□□□□□ -1.03
LIG1-211ENST00000596457 C13orf42A0A1B0GVH6 325 aa8.62□□□□□ -1.03
LIG1-211ENST00000596457 MARCH11A6NNE9 402 aa8.62□□□□□ -1.03
LIG1-211ENST00000596457 E7EUB6 86 aa8.62□□□□□ -1.03
LIG1-211ENST00000596457 CCL24O00175 119 aa8.62□□□□□ -1.03
LIG1-211ENST00000596457 SNAPC5O75971 98 aa8.62□□□□□ -1.03
LIG1-211ENST00000596457 PRH1P02810 166 aa8.62□□□□□ -1.03
LIG1-211ENST00000596457 REG1AP05451 166 aa8.62□□□□□ -1.03
LIG1-211ENST00000596457 CTSDP07339 412 aaPredicted RBP8.62□□□□□ -1.03
LIG1-211ENST00000596457 IL6RP08887 468 aaPredicted RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms