RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 PDCD5O14737 125 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 SLC22A5O76082 557 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 OR2C1O95371 312 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 RAB3BP20337 219 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 CBLN1P23435 193 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 ARFRP1Q13795 201 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 HACD4Q5VWC8 232 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 KCTD9Q7L273 389 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 VKORC1L1Q8N0U8 176 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 DCSTAMPQ9H295 470 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 SLC2A9Q9NRM0 540 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 MLXQ9UH92 298 aa8.79□□□□□ -1
CLIP3-204ENST00000590559 METTL21EPA6NDL7 271 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 ACTL6BO94805 426 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 NDUFB8O95169 186 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 CTXN2P0C2S0 81 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 C8orf88P0DMB2 117 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 CTRB1P17538 263 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 GALP22466 123 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 NFYAP23511 347 aaPredicted RBP8.78□□□□□ -1
CLIP3-204ENST00000590559 MAS1LP35410 378 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 ARL6IP1Q15041 203 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 CDNFQ49AH0 187 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 CTRB2Q6GPI1 263 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 ZNF367Q7RTV3 350 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 TMEM61Q8N0U2 210 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 DYNLRB2Q8TF09 96 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 CACNG8Q8WXS5 425 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 FYTTD1Q96QD9 318 aaKnown RBP8.78□□□□□ -1
CLIP3-204ENST00000590559 OR2A7Q96R45 310 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 OVOL2Q9BRP0 275 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 FBXL7Q9UJT9 491 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 PRELID3BQ9Y3B1 194 aa8.78□□□□□ -1
CLIP3-204ENST00000590559 IGLV11-55A0A075B6I3 123 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 SSX5O60225 188 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 AREGP15514 252 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 CD36P16671 472 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 PSMB6P28072 239 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 TALDO1P37837 337 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 RPL27AP46776 148 aaKnown RBP8.77□□□□□ -1.01
CLIP3-204ENST00000590559 GUCA2BQ16661 112 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 OR2B11Q5JQS5 317 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 CNIH2Q6PI25 160 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 CLEC19AQ6UXS0 136 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 MFSD4AQ8N468 514 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 OR4S2Q8NH73 311 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 VSTM2AQ8TAG5 236 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 HSD17B10Q99714 261 aaKnown RBP8.77□□□□□ -1.01
CLIP3-204ENST00000590559 ST6GALNAC5Q9BVH7 336 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 CCDC90BQ9GZT6 254 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 MRPS7Q9Y2R9 242 aaKnown RBP8.77□□□□□ -1.01
CLIP3-204ENST00000590559 HERC2O95714 4834 aa8.77□□□□□ -1.01
CLIP3-204ENST00000590559 J3QRK9 145 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 IGHV3-23P01764 117 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 ARL3P36405 182 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 MSMO1Q15800 293 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 ZNF57Q68EA5 555 aaPredicted RBP8.76□□□□□ -1.01
CLIP3-204ENST00000590559 ZNF66Q6ZN08 573 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 WFDC3Q8IUB2 231 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 NUDCD2Q8WVJ2 157 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 LINC00476Q8WZB0 136 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 DCUN1D5Q9BTE7 237 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 ATG5Q9H1Y0 275 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 BET1LQ9NYM9 111 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 ANXA10Q9UJ72 324 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 S4R3C0 116 aa8.76□□□□□ -1.01
CLIP3-204ENST00000590559 TMEM235A6NFC5 223 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 MFSD2BA6NFX1 497 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 ANKRD65E5RJM6 399 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 MYOD1P15172 320 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 HIST1H1BP16401 226 aaKnown RBP8.75□□□□□ -1.01
CLIP3-204ENST00000590559 MYL9P24844 172 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 FGF9P31371 208 aaPredicted RBP8.75□□□□□ -1.01
CLIP3-204ENST00000590559 RPL8P62917 257 aaKnown RBP8.75□□□□□ -1.01
CLIP3-204ENST00000590559 FAM106AQ4KMX7 169 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 C22orf42Q6IC83 251 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 ZNF773Q6PK81 442 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 UNQ9165/PRO28630Q6UXU0 137 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 SLC16A13Q7RTY0 426 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 UXS1Q8NBZ7 420 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 GPHA2Q96T91 129 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 GGTLC1Q9BX51 225 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 SPATA2Q9UM82 520 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 SELENOKQ9Y6D0 94 aa8.75□□□□□ -1.01
CLIP3-204ENST00000590559 TRBV7-1A0A0A6YYK4 115 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 TRAV25A0A0B4J276 109 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 IGLC7A0M8Q6 106 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 NOTOA8MTQ0 251 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 HRASP01112 189 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 CLEC3BP05452 202 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 FGF2P09038 288 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 ELLP55199 621 aaPredicted RBP8.74□□□□□ -1.01
CLIP3-204ENST00000590559 OR2B8PP59922 312 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 EWSR1Q01844 656 aaKnown RBP eCLIP8.74□□□□□ -1.01
CLIP3-204ENST00000590559 TNFRSF9Q07011 255 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 POU2AF1Q16633 256 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 TIMM50Q3ZCQ8 353 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 TM4SF20Q53R12 229 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 OR4A47Q6IF82 309 aa8.74□□□□□ -1.01
CLIP3-204ENST00000590559 OR4A5Q8NH83 315 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms