RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 DDTP30046 118 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 PTH2RP49190 550 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 CAV3P56539 151 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 MXD1Q05195 221 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 SMIM21Q3B7S5 101 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 TMEM255AQ5JRV8 349 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 BCL2L15Q5TBC7 163 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 WDR25Q64LD2 544 aaPredicted RBP5.55□□□□□ -1.52
VPS53-217ENST00000575100 CEACAM19Q7Z692 300 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 ZNF383Q8NA42 475 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 SLC30A7Q8NEW0 376 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 ZNF420Q8TAQ5 688 aaPredicted RBP5.55□□□□□ -1.52
VPS53-217ENST00000575100 C11orf45Q8TAV5 145 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 SPTSSAQ969W0 71 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 SFRP2Q96HF1 295 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 C20orf173Q96LM9 149 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 RCHY1Q96PM5 261 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 TBX15Q96SF7 602 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 NXF2Q9GZY0 626 aaKnown RBP5.55□□□□□ -1.52
VPS53-217ENST00000575100 ARV1Q9H2C2 271 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 ESM1Q9NQ30 184 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 GPR84Q9NQS5 396 aa5.55□□□□□ -1.52
VPS53-217ENST00000575100 SPANXB1Q9NS25 103 aaPredicted RBP5.55□□□□□ -1.52
VPS53-217ENST00000575100 VPS13CQ709C8 3753 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 AKAP6Q13023 2319 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 TMEM212A6NML5 194 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 OR11H12B2RN74 326 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 I3L521 148 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 IGLV1-44P01699 117 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 HLA-DPB1P04440 258 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 OR8U9P0C7N5 309 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 PAX1P15863 534 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 ZNF83P51522 516 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 ZNF92Q03936 586 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 DAZAP2Q15038 168 aaPredicted RBP5.54□□□□□ -1.52
VPS53-217ENST00000575100 FBXL19-AS1Q494R0 122 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 GLYATL3Q5SZD4 288 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 PAMR1Q6UXH9 720 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 UNQ9370/PRO34162Q6UXP9 181 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 FBXL14Q8N1E6 418 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 OR11H1Q8NG94 326 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 OR10X1Q8NGY0 326 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 OR6F1Q8NGZ6 308 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 OR11H2Q8NH07 326 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 DYRK2Q92630 601 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 TMEM106AQ96A25 262 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 ADAT3Q96EY9 351 aaPredicted RBP5.54□□□□□ -1.52
VPS53-217ENST00000575100 DERL3Q96Q80 235 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 CHIAQ9BZP6 476 aa5.54□□□□□ -1.52
VPS53-217ENST00000575100 FLNAP21333 2647 aaKnown RBP5.54□□□□□ -1.52
VPS53-217ENST00000575100 IQCMA0A1B0GVH7 501 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 C16orf97H3BN30 126 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 UCHL1P09936 223 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 TBPP20226 339 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 S100A11P31949 105 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 SDC2P34741 201 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 SLURP1P55000 103 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 HERV-K104P61576 105 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 RPL24P83731 157 aaKnown RBP5.53□□□□□ -1.52
VPS53-217ENST00000575100 PLP2Q04941 152 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 ECH1Q13011 328 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 Q499Y3 187 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 CDNFQ49AH0 187 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 PLET1Q6UQ28 207 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 OR51A2Q8NGJ7 313 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 IL1F10Q8WWZ1 152 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 NARS2Q96I59 477 aaKnown RBP5.53□□□□□ -1.52
VPS53-217ENST00000575100 PHB2Q99623 299 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 DCSTAMPQ9H295 470 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 MIXL1Q9H2W2 232 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 LIME1Q9H400 295 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 WFDC1Q9HC57 220 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 ELOVL5Q9NYP7 299 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 SSR3Q9UNL2 185 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 IGHV2OR16-5A0A0B4J2B6 119 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 A0A1W2PPI3 338 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 MEIOCA2RUB1 952 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 M0R1B8 84 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 ATP6V0E1O15342 81 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 CDRT1O95170 752 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 CCL1P22362 96 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 APLNRP35414 380 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 PPOXP50336 477 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 CD164Q04900 197 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 LINC01560Q8TB33 94 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 HAVCR2Q8TDQ0 301 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 FGGYQ96C11 551 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 REEP6Q96HR9 211 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 OR5B12Q96R08 314 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 PPDPFQ9H3Y8 114 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 MOB1AQ9H8S9 216 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 HHLA2Q9UM44 414 aa5.53□□□□□ -1.52
VPS53-217ENST00000575100 DNHD1Q96M86 4753 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 NIPBLQ6KC79 2804 aaeCLIP5.52□□□□□ -1.53
VPS53-217ENST00000575100 PHF1O43189 567 aaPredicted RBP5.52□□□□□ -1.53
VPS53-217ENST00000575100 SYNGR1O43759 233 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 CD8AP01732 235 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 HIST1H1EP10412 219 aaKnown RBP5.52□□□□□ -1.53
VPS53-217ENST00000575100 HNRNPA3P51991 378 aaKnown RBP5.52□□□□□ -1.53
VPS53-217ENST00000575100 KLF3P57682 345 aaPredicted RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms