RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 HPRT1P00492 218 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 HRASP01112 189 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 PF4V1P10720 104 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 RPA2P15927 270 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 F2RP25116 425 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 PTBP1P26599 531 aaKnown RBP eCLIP12.35□□□□□ -0.43
CHD3-215ENST00000572750 TAS2R31P59538 309 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 KLF9Q13886 244 aaPredicted RBP12.35□□□□□ -0.43
CHD3-215ENST00000572750 OR4A47Q6IF82 309 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 UNQ5815/PRO19632Q6UWF5 114 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 PUSL1Q8N0Z8 303 aaKnown RBP12.35□□□□□ -0.43
CHD3-215ENST00000572750 MINDY2Q8NBR6 621 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 OR51S1Q8NGJ8 323 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 CD300LFQ8TDQ1 290 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 OR2A7Q96R45 310 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 COMMD9Q9P000 198 aa12.35□□□□□ -0.43
CHD3-215ENST00000572750 NUDT19A8MXV4 375 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 IGLV1-40P01703 118 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 ELANEP08246 267 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 NQO2P16083 231 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 PIGPP57054 158 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 CNPY1Q3B7I2 92 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 ASPHD1Q5U4P2 390 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 MMD2Q8IY49 270 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 RNF152Q8N8N0 203 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 KLHL30-AS1Q8NEE0 82 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 VSTM2AQ8TAG5 236 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 TMEM167AQ8TBQ9 72 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 SRSF12Q8WXF0 261 aaKnown RBP12.34□□□□□ -0.43
CHD3-215ENST00000572750 ZNF486Q96H40 463 aaPredicted RBP12.34□□□□□ -0.43
CHD3-215ENST00000572750 PHB2Q99623 299 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 PRRT1Q99946 306 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 KLK15Q9H2R5 256 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 PLEKHA2Q9HB19 425 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 HRASLSQ9HDD0 168 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 TMEM140Q9NV12 185 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 NUBP2Q9Y5Y2 271 aa12.34□□□□□ -0.43
CHD3-215ENST00000572750 MARCH11A6NNE9 402 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 ACTL6BO94805 426 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 MYOD1P15172 320 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 LPAR6P43657 344 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 RND3P61587 244 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 TMEM267Q0VDI3 215 aaPredicted RBP12.33□□□□□ -0.44
CHD3-215ENST00000572750 ZNF585BQ52M93 769 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 AKIRIN2Q53H80 203 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 C8orf86Q6ZUL3 223 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 TOMM5Q8N4H5 51 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 TCTEX1D1Q8N7M0 179 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 DMBX1Q8NFW5 382 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 OR4F17Q8NGA8 305 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 OR4F4Q96R69 305 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 SLC2A8Q9NY64 477 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 BET1LQ9NYM9 111 aa12.33□□□□□ -0.44
CHD3-215ENST00000572750 TRAV3A0A0B4J244 114 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 MPPED1O15442 326 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 CTSDP07339 412 aaPredicted RBP12.32□□□□□ -0.44
CHD3-215ENST00000572750 G6PCP35575 357 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 ECI1P42126 302 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 AP3S2P59780 193 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 POU2AF1Q16633 256 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 DEFB136Q30KP8 78 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 TMEM65Q6PI78 240 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 ZFAND1Q8TCF1 268 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 MYOZ3Q8TDC0 251 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 SDHCQ99643 169 aaPredicted RBP12.32□□□□□ -0.44
CHD3-215ENST00000572750 ZFP57Q9NU63 452 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 COPZ2Q9P299 210 aa12.32□□□□□ -0.44
CHD3-215ENST00000572750 C14orf166Q9Y224 244 aaKnown RBP12.32□□□□□ -0.44
CHD3-215ENST00000572750 MSGN1A6NI15 193 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 H0Y980 276 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 KRASP01116 189 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 HLA-GP17693 338 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 FAUP35544 74 aaKnown RBP12.31□□□□□ -0.44
CHD3-215ENST00000572750 ERVK-16P61578 105 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 RPL8P62917 257 aaKnown RBP12.31□□□□□ -0.44
CHD3-215ENST00000572750 BAK1Q16611 211 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 TRIQKQ629K1 86 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 ZNF57Q68EA5 555 aaPredicted RBP12.31□□□□□ -0.44
CHD3-215ENST00000572750 ETV3LQ6ZN32 361 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 ZNF695Q8IW36 515 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 CCDC71LQ8N9Z2 235 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 OR5T1Q8NG75 326 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 OR5M8Q8NGP6 311 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 MS4A10Q96PG2 267 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 TP53RKQ96S44 253 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 AIFM2Q9BRQ8 373 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 C5orf66Q9H5L9 145 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 GNB4Q9HAV0 340 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 SCP2D1Q9UJQ7 156 aa12.31□□□□□ -0.44
CHD3-215ENST00000572750 EPPK1P58107 5090 aaKnown RBP12.3□□□□□ -0.44
CHD3-215ENST00000572750 A0A1B0GW64 132 aa12.3□□□□□ -0.44
CHD3-215ENST00000572750 E7EUB6 86 aa12.3□□□□□ -0.44
CHD3-215ENST00000572750 IGKV1-39P01597 117 aa12.3□□□□□ -0.44
CHD3-215ENST00000572750 PF4P02776 101 aa12.3□□□□□ -0.44
CHD3-215ENST00000572750 IGKV1D-39P04432 117 aa12.3□□□□□ -0.44
CHD3-215ENST00000572750 RPL27AP46776 148 aaKnown RBP12.3□□□□□ -0.44
CHD3-215ENST00000572750 RAB9AP51151 201 aa12.3□□□□□ -0.44
CHD3-215ENST00000572750 TPPP2P59282 170 aa12.3□□□□□ -0.44
CHD3-215ENST00000572750 DEFA5Q01523 94 aa12.3□□□□□ -0.44
CHD3-215ENST00000572750 SURF2Q15527 256 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms