RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 SNTNA6NMZ2 147 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 SRRM4A7MD48 611 aaKnown RBP4.23□□□□□ -1.73
VPS53-208ENST00000570650 CREBL2O60519 120 aaPredicted RBP4.23□□□□□ -1.73
VPS53-208ENST00000570650 CRTAPO75718 401 aaPredicted RBP4.23□□□□□ -1.73
VPS53-208ENST00000570650 DCTN3O75935 186 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 ACTL6BO94805 426 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 MYOD1P15172 320 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 IGFBP3P17936 291 aaPredicted RBP4.23□□□□□ -1.73
VPS53-208ENST00000570650 GTF2A1P52655 376 aaPredicted RBP4.23□□□□□ -1.73
VPS53-208ENST00000570650 UBE2KP61086 200 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 SNRPGP62308 76 aaKnown RBP4.23□□□□□ -1.73
VPS53-208ENST00000570650 TMEM187Q14656 261 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 RTL8BQ17RB0 113 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 C1orf134Q5TEV5 83 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 MEDAGQ5VYS4 303 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 LAMTOR1Q6IAA8 161 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 ZNF880Q6PDB4 577 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 UNQ9165/PRO28630Q6UXU0 137 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 Q6ZR54 194 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 Q6ZTC4 211 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 MOB1BQ7L9L4 216 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 APRG1Q8IVJ8 170 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 JAGN1Q8N5M9 183 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.23□□□□□ -1.73
VPS53-208ENST00000570650 OR13C5Q8NGS8 318 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 SETD6Q8TBK2 473 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 TRUB1Q8WWH5 349 aaKnown RBP4.23□□□□□ -1.73
VPS53-208ENST00000570650 EEF1AKMT3Q96AZ1 226 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 ORAI1Q96D31 301 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 NEDD4LQ96PU5 975 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 GABARAPL3Q9BY60 117 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 GABARAPL1Q9H0R8 117 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 CHMP1AQ9HD42 196 aaPredicted RBP4.23□□□□□ -1.73
VPS53-208ENST00000570650 ARGLU1Q9NWB6 273 aaPredicted RBP4.23□□□□□ -1.73
VPS53-208ENST00000570650 IMPAD1Q9NX62 359 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 OR1A1Q9P1Q5 309 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 UFC1Q9Y3C8 167 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 S4R3C0 116 aa4.23□□□□□ -1.73
VPS53-208ENST00000570650 IGLV2-18A0A075B6J9 118 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 TCRBV3S1A0A5B6 114 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 NPIPB5A8MRT5 1133 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 DYNC1I1O14576 645 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 NAPSAO96009 420 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 CA1P00915 261 aaPredicted RBP4.22□□□□□ -1.73
VPS53-208ENST00000570650 IFNA10P01566 189 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 RRASP10301 218 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 PSMB6P28072 239 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 CMC4P56277 68 aaPredicted RBP4.22□□□□□ -1.73
VPS53-208ENST00000570650 HLA-DRB3P79483 266 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 FLOT2Q14254 428 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 RBMY1FQ15415 496 aaKnown RBP4.22□□□□□ -1.73
VPS53-208ENST00000570650 C10orf55Q5SWW7 151 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 IDO2Q6ZQW0 420 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 C6orf201Q7Z4U5 140 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 CDH26Q8IXH8 852 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 Q8NAQ8 132 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 LGALS12Q96DT0 336 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 FAAP24Q9BTP7 215 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 THTPAQ9BU02 230 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 NDUFAF3Q9BU61 184 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 CKLFQ9UBR5 152 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 ARL2BPQ9Y2Y0 163 aa4.22□□□□□ -1.73
VPS53-208ENST00000570650 TRAV8-7A0A075B6U6 113 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 DEFB131BA0A096LNP1 70 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 TRBV6-6A0A0A6YYG2 114 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 TRBV7-1A0A0A6YYK4 115 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 IGHV4-28A0A0C4DH34 117 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 DPPA5A6NC42 116 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 HMX3A6NHT5 357 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 M0QYG6 137 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 CRYZL1O95825 349 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 DHFRP00374 187 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 IFNA21P01568 189 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 IFNA17P01571 189 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 CLEC3BP05452 202 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 RBMY1A1P0DJD3 496 aaKnown RBP4.21□□□□□ -1.74
VPS53-208ENST00000570650 RBMY1CP0DJD4 496 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 SAA1P0DJI8 122 aaPredicted RBP4.21□□□□□ -1.74
VPS53-208ENST00000570650 CALB2P22676 271 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 TPBGQ13641 420 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 CDK10Q15131 360 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 ATP6AP1Q15904 470 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 CCDC58Q4VC31 144 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 XAF1Q6GPH4 301 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 RPL22L1Q6P5R6 122 aaKnown RBP4.21□□□□□ -1.74
VPS53-208ENST00000570650 PLET1Q6UQ28 207 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 CEACAM19Q7Z692 300 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 UBE2DNLQ8IWF7 75 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 MMD2Q8IY49 270 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 OSR1Q8TAX0 266 aaPredicted RBP4.21□□□□□ -1.74
VPS53-208ENST00000570650 CXorf58Q96LI9 332 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 FYTTD1Q96QD9 318 aaKnown RBP4.21□□□□□ -1.74
VPS53-208ENST00000570650 ZNF436Q9C0F3 470 aaPredicted RBP4.21□□□□□ -1.74
VPS53-208ENST00000570650 OR2D2Q9H210 308 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 RIMS4Q9H426 269 aaPredicted RBP4.21□□□□□ -1.74
VPS53-208ENST00000570650 ZNF430Q9H8G1 570 aaPredicted RBP4.21□□□□□ -1.74
VPS53-208ENST00000570650 SDHAF2Q9NX18 166 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 RDH8Q9NYR8 311 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 GHRLQ9UBU3 117 aa4.21□□□□□ -1.74
VPS53-208ENST00000570650 MGAT4AQ9UM21 535 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms