RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 LEMD1Q68G75 181 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 ZNF324BQ6AW86 544 aaPredicted RBP9.63□□□□□ -0.87
CLN3-238ENST00000569430 ABLIM2Q6H8Q1 611 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 LINC01551Q86U37 167 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 ZNF645Q8N7E2 425 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 SMRP1Q8NCR6 262 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 POM121L2Q96KW2 1035 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 CACNA1BQ00975 2339 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 IGKV1-6A0A0C4DH72 117 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 AGFG2O95081 481 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 LINC00205P59089 165 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 PLGLAQ15195 96 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 PRSS8Q16651 343 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 LEAP2Q969E1 77 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 PARD6GQ9BYG4 376 aaPredicted RBP9.63□□□□□ -0.87
CLN3-238ENST00000569430 RAB9BQ9NP90 201 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 IL19Q9UHD0 177 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 POLR3KQ9Y2Y1 108 aaPredicted RBP9.63□□□□□ -0.87
CLN3-238ENST00000569430 LOXL2Q9Y4K0 774 aa9.63□□□□□ -0.87
CLN3-238ENST00000569430 TDGF1P3P51864 188 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 PRR31Q5SQ13 230 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 IBA57Q5T440 356 aaKnown RBP9.62□□□□□ -0.87
CLN3-238ENST00000569430 TDHQ8IZJ6 230 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 ZBTB34Q8NCN2 500 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 H1FXQ92522 213 aaKnown RBP9.62□□□□□ -0.87
CLN3-238ENST00000569430 RNF2Q99496 336 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 DCTN5Q9BTE1 182 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 TCFL5Q9UL49 500 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 SPRY3O43610 288 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 CGAP01215 116 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 GNB1P62873 340 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 OR5P3Q8WZ94 311 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 NRN1Q9NPD7 142 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 TMEM167BQ9NRX6 74 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 TIMM9Q9Y5J7 89 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 C12orf77C9JDV5 145 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 CLDN14O95500 239 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 PLAUP00749 431 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 IGHV3-48P01763 117 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 ERHP84090 104 aaKnown RBP9.62□□□□□ -0.87
CLN3-238ENST00000569430 CENPWQ5EE01 88 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 LINC00596Q86U02 117 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 DTX1Q86Y01 620 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 SAXO1Q8IYX7 474 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 C1QTNF5Q9BXJ0 243 aa9.62□□□□□ -0.87
CLN3-238ENST00000569430 PATE3B3GLJ2 98 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 NEURL1O76050 574 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 SLC25A5P05141 298 aaKnown RBP9.61□□□□□ -0.87
CLN3-238ENST00000569430 CELA3AP09093 270 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 COX6A1P12074 109 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 ORM2P19652 201 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 GCHFRP30047 84 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 MZT1Q08AG7 82 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 DECR2Q9NUI1 292 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 NUP210Q8TEM1 1887 aaPredicted RBP9.61□□□□□ -0.87
CLN3-238ENST00000569430 IGHV3OR15-7A0A075B7D8 119 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 SERTM2A0A1B0GWG4 89 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 IGKV1D-33P01593 117 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 IGKV1-33P01594 117 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 COX5BP10606 129 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 PLA2G5P39877 138 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 OR2T6Q8NHC8 308 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 RNASE7Q9H1E1 156 aaKnown RBP9.61□□□□□ -0.87
CLN3-238ENST00000569430 GTF3C1Q12789 2109 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 OPRK1P41145 380 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 ACTL10Q5JWF8 245 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 DIRC2Q96SL1 478 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 IL36BQ9NZH7 164 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 LAMTOR2Q9Y2Q5 125 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 RNF115Q9Y4L5 304 aa9.61□□□□□ -0.87
CLN3-238ENST00000569430 RAB29O14966 203 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 GATA2P23769 480 aaPredicted RBP9.6□□□□□ -0.87
CLN3-238ENST00000569430 PCED1AQ9H1Q7 454 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 WDR54Q9H977 334 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 LOC400499M0QZD8 3231 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 IGLV3-12A0A075B6K2 115 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 FOXI3A8MTJ6 420 aaPredicted RBP9.6□□□□□ -0.87
CLN3-238ENST00000569430 TNFSF13O75888 250 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 FOXA3P55318 350 aaPredicted RBP9.6□□□□□ -0.87
CLN3-238ENST00000569430 MRPS11P82912 194 aaKnown RBP9.6□□□□□ -0.87
CLN3-238ENST00000569430 RNPS1Q15287 305 aaKnown RBP9.6□□□□□ -0.87
CLN3-238ENST00000569430 RTL8BQ17RB0 113 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 OR4A47Q6IF82 309 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 OR4S2Q8NH73 311 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 SCRT1Q9BWW7 348 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 MS4A5Q9H3V2 200 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 EML5Q05BV3 1969 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 LILRA1O75019 489 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 MT-ND6P03923 174 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 CCL11P51671 97 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 RNASEH2CQ8TDP1 164 aaKnown RBP9.6□□□□□ -0.87
CLN3-238ENST00000569430 GMPPAQ96IJ6 420 aaPredicted RBP9.6□□□□□ -0.87
CLN3-238ENST00000569430 UBE2ZQ9H832 354 aaPredicted RBP9.6□□□□□ -0.87
CLN3-238ENST00000569430 SELENOKQ9Y6D0 94 aa9.6□□□□□ -0.87
CLN3-238ENST00000569430 IGLV3-32A0A0A0MS00 114 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 TRGV5A0A0B4J1U4 118 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 BMPR1BO00238 502 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 LTBRP36941 435 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 MEOX1P50221 254 aa9.59□□□□□ -0.87
CLN3-238ENST00000569430 SSX8Q7RTT4 187 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms