RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ARRDC1-AS1Q9H2J1 176 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 TIMM9Q9Y5J7 89 aa12.11□□□□□ -0.47
VPS35-210ENST00000568784 TRAV3A0A0B4J244 114 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 ACTL10Q5JWF8 245 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 SPATA31B1PQ5VZV4 182 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 NHLRC2Q8NBF2 726 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 OR10J1P30954 320 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 AMTP48728 403 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 ASPHD1Q5U4P2 390 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 GBGT1Q8N5D6 347 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 MRPL18Q9H0U6 180 aaKnown RBP12.1□□□□□ -0.47
VPS35-210ENST00000568784 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.1□□□□□ -0.47
VPS35-210ENST00000568784 GATA2P23769 480 aaPredicted RBP12.1□□□□□ -0.47
VPS35-210ENST00000568784 CCL11P51671 97 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 PSG5Q15238 335 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 SMIM21Q3B7S5 101 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 DOLPP1Q86YN1 238 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 BCL2L2Q92843 193 aaPredicted RBP12.1□□□□□ -0.47
VPS35-210ENST00000568784 TXN2Q99757 166 aa12.1□□□□□ -0.47
VPS35-210ENST00000568784 SERF1AO75920 110 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 HPRT1P00492 218 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 SP1P08047 785 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 SPCS3P61009 180 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 FAM201AQ5SY85 155 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 HES3Q5TGS1 186 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 PRR27Q6MZM9 219 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 YLPM1P49750 1951 aaKnown RBP12.09□□□□□ -0.47
VPS35-210ENST00000568784 RAB29O14966 203 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 NRN1LQ496H8 165 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 ZNRF1Q8ND25 227 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 C2orf88Q9BSF0 95 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 MYOD1P15172 320 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 ATOH7Q8N100 152 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 LYG1Q8N1E2 194 aa12.09□□□□□ -0.47
VPS35-210ENST00000568784 INTS1Q8N201 2190 aaKnown RBP12.09□□□□□ -0.47
VPS35-210ENST00000568784 TRBV6-6A0A0A6YYG2 114 aa12.08□□□□□ -0.47
VPS35-210ENST00000568784 MT-CO2P00403 227 aa12.08□□□□□ -0.47
VPS35-210ENST00000568784 NUTF2P61970 127 aaKnown RBP12.08□□□□□ -0.47
VPS35-210ENST00000568784 OR5AU1Q8NGC0 362 aa12.08□□□□□ -0.47
VPS35-210ENST00000568784 COQ2Q96H96 371 aa12.08□□□□□ -0.47
VPS35-210ENST00000568784 ACACAQ13085 2346 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 C15orf62A8K5M9 175 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 SPRY3O43610 288 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 GGCTO75223 188 aaKnown RBP12.08□□□□□ -0.48
VPS35-210ENST00000568784 TFPI2P48307 235 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 FOXF2Q12947 444 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 C5orf30Q96GV9 206 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 AGMATQ9BSE5 352 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 POLR3KQ9Y2Y1 108 aaPredicted RBP12.08□□□□□ -0.48
VPS35-210ENST00000568784 TNFSF15O95150 251 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 VENTXO95231 258 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 IGHV3-48P01763 117 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 TDRG1Q3Y452 100 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 CGAP01215 116 aa12.08□□□□□ -0.48
VPS35-210ENST00000568784 MED13LQ71F56 2210 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 CRYBB3P26998 211 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 HLA-DRB5Q30154 266 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 ZNF766Q5HY98 468 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 ZBTB34Q8NCN2 500 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 MRPL37Q9BZE1 423 aaKnown RBP12.07□□□□□ -0.48
VPS35-210ENST00000568784 SEPSECSQ9HD40 501 aaKnown RBP12.07□□□□□ -0.48
VPS35-210ENST00000568784 WNK2Q9Y3S1 2297 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 C9orf172C9J069 976 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 MKRN2OSH3BPM6 223 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 FOXH1O75593 365 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 GNG4P50150 75 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 IER2Q9BTL4 223 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 ZNF253O75346 499 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 CXorf1O96002 111 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 FRMD6-AS1P0C7T7 363 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 TREML4Q6UXN2 200 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 PQLC2Q6ZP29 291 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 KCNIP2Q9NS61 270 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 TMEM140Q9NV12 185 aa12.07□□□□□ -0.48
VPS35-210ENST00000568784 PRDX2P32119 198 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 TIMP3P35625 211 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 SOX8P57073 446 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 SUMO1P63165 101 aaKnown RBP12.06□□□□□ -0.48
VPS35-210ENST00000568784 RPL19P84098 196 aaKnown RBP12.06□□□□□ -0.48
VPS35-210ENST00000568784 ZNF718Q3SXZ3 478 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 TIGITQ495A1 244 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 Q6ZR03 302 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 ZNF586Q9NXT0 402 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 WDR83OSQ9Y284 106 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 F2Z2F3 143 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 IGHV1-2P23083 117 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 RHOBP62745 196 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 LCN2P80188 198 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 ZNF146Q15072 292 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 RNASEH2CQ8TDP1 164 aaKnown RBP12.06□□□□□ -0.48
VPS35-210ENST00000568784 ZCCHC14Q8WYQ9 949 aaKnown RBP12.06□□□□□ -0.48
VPS35-210ENST00000568784 MBNL3Q9NUK0 354 aaKnown RBP12.06□□□□□ -0.48
VPS35-210ENST00000568784 TCF19Q9Y242 345 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 PCNX2A6NKB5 2137 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 NPY1RP25929 384 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 LBHQ53QV2 105 aaPredicted RBP12.06□□□□□ -0.48
VPS35-210ENST00000568784 ACP7Q6ZNF0 438 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 SGK494Q96LW2 274 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 PYGO2Q9BRQ0 406 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 RNASE7Q9H1E1 156 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms