RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 UFC1Q9Y3C8 167 aa8.52□□□□□ -1.05
CLK3-222ENST00000568232 RPL36Q9Y3U8 105 aaKnown RBP8.52□□□□□ -1.05
CLK3-222ENST00000568232 IGHV4-28A0A0C4DH34 117 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 OR4C46A6NHA9 309 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 ACTL6BO94805 426 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 CRYZL1O95825 349 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 CTSDP07339 412 aaPredicted RBP8.51□□□□□ -1.05
CLK3-222ENST00000568232 LIMS3P0CW19 117 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 LIMS4P0CW20 117 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 SAA1P0DJI8 122 aaPredicted RBP8.51□□□□□ -1.05
CLK3-222ENST00000568232 GALP22466 123 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 CBX3Q13185 183 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 TMEM187Q14656 261 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 RTL8BQ17RB0 113 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 GLT8D1Q68CQ7 371 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 LAMTOR1Q6IAA8 161 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 SLC25A42Q86VD7 318 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.51□□□□□ -1.05
CLK3-222ENST00000568232 TSPAN14Q8NG11 270 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 OR52I1Q8NGK6 324 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 NICN1Q9BSH3 213 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 OR2D2Q9H210 308 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 VCX3AQ9NNX9 186 aa8.51□□□□□ -1.05
CLK3-222ENST00000568232 A0A1B0GW64 132 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 NPIPB5A8MRT5 1133 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 AMBPP02760 352 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 IL6RP08887 468 aaPredicted RBP8.5□□□□□ -1.05
CLK3-222ENST00000568232 CD3GP09693 182 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 AREGP15514 252 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 GPR183P32249 361 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 TFPI2P48307 235 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 ELLP55199 621 aaPredicted RBP8.5□□□□□ -1.05
CLK3-222ENST00000568232 RPS11P62280 158 aaKnown RBP eCLIP8.5□□□□□ -1.05
CLK3-222ENST00000568232 CCDC58Q4VC31 144 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 SOHLH1Q5JUK2 328 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 C1orf134Q5TEV5 83 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 OR2G6Q5TZ20 316 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 Q6ZRM9 215 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 MOB1BQ7L9L4 216 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 KCNK15Q9H427 330 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 AK3Q9UIJ7 227 aa8.5□□□□□ -1.05
CLK3-222ENST00000568232 IGHV3OR16-8A0A075B7F1 116 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 DEFB131BA0A096LNP1 70 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 TRBV5-7A0A0A0MS05 114 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 A0A0A6YYD4 124 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 SNTNA6NMZ2 147 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 LINC00473A8K010 186 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 OGG1O15527 345 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 ZNF207O43670 478 aaKnown RBP8.49□□□□□ -1.05
CLK3-222ENST00000568232 LALBAP00709 142 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 IFNA10P01566 189 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 REG1AP05451 166 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 MYOD1P15172 320 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 GABRB1P18505 474 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 CALRP27797 417 aaKnown RBP8.49□□□□□ -1.05
CLK3-222ENST00000568232 RPS27AP62979 156 aaKnown RBP8.49□□□□□ -1.05
CLK3-222ENST00000568232 CDK10Q15131 360 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 Q499Y3 187 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 RBM48Q5RL73 367 aaKnown RBP8.49□□□□□ -1.05
CLK3-222ENST00000568232 C8orf59Q8N0T1 100 aaPredicted RBP8.49□□□□□ -1.05
CLK3-222ENST00000568232 CYGBQ8WWM9 190 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 SMIM19Q96E16 107 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 FYTTD1Q96QD9 318 aaKnown RBP8.49□□□□□ -1.05
CLK3-222ENST00000568232 TSC22D3Q99576 134 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 NDUFAF3Q9BU61 184 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 ZNF436Q9C0F3 470 aaPredicted RBP8.49□□□□□ -1.05
CLK3-222ENST00000568232 Q9N2K0 584 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 PLEKHJ1Q9NW61 149 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 MYCBP2O75592 4640 aa8.49□□□□□ -1.05
CLK3-222ENST00000568232 TRBV6-6A0A0A6YYG2 114 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 TRBV7-1A0A0A6YYK4 115 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 ZNF701M0R085 212 aaPredicted RBP8.48□□□□□ -1.05
CLK3-222ENST00000568232 MRPS14O60783 128 aaKnown RBP8.48□□□□□ -1.05
CLK3-222ENST00000568232 CRYGCP07315 174 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 RRASP10301 218 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 PSMB6P28072 239 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 ETV1P50549 477 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 PLET1Q6UQ28 207 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 SSX9Q7RTT3 188 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 CDH26Q8IXH8 852 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 MMD2Q8IY49 270 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 VKORC1L1Q8N0U8 176 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 ZFP41Q8N8Y5 198 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 OR6M1Q8NGM8 313 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 TMEM190Q8WZ59 177 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 SLC2A9Q9NRM0 540 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 CELA1Q9UNI1 258 aa8.48□□□□□ -1.05
CLK3-222ENST00000568232 IGKV3-7A0A075B6H7 116 aa8.47□□□□□ -1.05
CLK3-222ENST00000568232 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.47□□□□□ -1.05
CLK3-222ENST00000568232 H2AFB1P0C5Y9 115 aa8.47□□□□□ -1.05
CLK3-222ENST00000568232 H2AFB2P0C5Z0 115 aa8.47□□□□□ -1.05
CLK3-222ENST00000568232 GSTT2P0CG29 244 aa8.47□□□□□ -1.05
CLK3-222ENST00000568232 GSTT2BP0CG30 244 aa8.47□□□□□ -1.05
CLK3-222ENST00000568232 UNC119Q13432 240 aa8.47□□□□□ -1.05
CLK3-222ENST00000568232 C12orf74Q32Q52 190 aa8.47□□□□□ -1.05
CLK3-222ENST00000568232 UBE2DNLQ8IWF7 75 aa8.47□□□□□ -1.05
CLK3-222ENST00000568232 CENPSQ8N2Z9 138 aa8.47□□□□□ -1.05
CLK3-222ENST00000568232 OSR1Q8TAX0 266 aaPredicted RBP8.47□□□□□ -1.05
CLK3-222ENST00000568232 ZNF502Q8TBZ5 544 aa8.47□□□□□ -1.05
CLK3-222ENST00000568232 TMEM59Q9BXS4 323 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms