RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 ZNF223Q9UK11 482 aaPredicted RBP3.95□□□□□ -1.78
VPS35P1-201ENST00000563400 SIGLEC7Q9Y286 467 aa3.95□□□□□ -1.78
VPS35P1-201ENST00000563400 MED31Q9Y3C7 131 aa3.95□□□□□ -1.78
VPS35P1-201ENST00000563400 CACNA1BQ00975 2339 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 SPTBP11277 2137 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 IGLV4-3A0A075B6K6 122 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 TRAV9-2A0A087WT02 112 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 TRAPPC13A5PLN9 417 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 PDCD6O75340 191 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 ARL6IP5O75915 188 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 ATG12O94817 140 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 ZNF682O95780 498 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 CRYGDP07320 174 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 OMGP23515 440 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 S100GP29377 79 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 DSCR9P59020 149 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 C1DQ13901 141 aaKnown RBP3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 PMVKQ15126 192 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 NNATQ16517 81 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 GSG1Q2KHT4 349 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 AVPI1Q5T686 147 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 MARCH3Q86UD3 253 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 C1orf174Q8IYL3 243 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 DEFB107AQ8IZN7 70 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 CADM2Q8N3J6 435 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 OR9I1Q8NGQ6 314 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 OR2T4Q8NH00 348 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 RPUSD4Q96CM3 377 aaKnown RBP3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 FXYD5Q96DB9 178 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 PYURFQ96I23 114 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 TSC22D3Q99576 134 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 GINS3Q9BRX5 216 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 SFXN3Q9BWM7 321 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 C1QTNF4Q9BXJ3 329 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 RNF122Q9H9V4 155 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 WFDC1Q9HC57 220 aa3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 ZNF443Q9Y2A4 671 aaPredicted RBP3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 F11RQ9Y624 299 aaKnown RBP3.94□□□□□ -1.78
VPS35P1-201ENST00000563400 SCN2AQ99250 2005 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 SPTBN2O15020 2390 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 A0A0U1RQV1 116 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 SOCS2O14508 198 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 ZNF780AO75290 641 aaPredicted RBP3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 MRPL33O75394 65 aaKnown RBP3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 TRBV12-3P01733 135 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 FABP3P05413 133 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 ATP5G1P05496 136 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 CCL3P10147 92 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 CD1EP15812 388 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 OR1E2P47887 323 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 EMX1Q04741 257 aaPredicted RBP3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 SLC25A30Q5SVS4 291 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 ADAMTSL4-AS1Q5T5F5 129 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 MRPL2Q5T653 305 aaKnown RBP3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 LEMD1Q68G75 181 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 PLET1Q6UQ28 207 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 TMPPEQ6ZT21 453 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 STX19Q8N4C7 294 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 ZNF561Q8N587 486 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 TMEM252Q8N6L7 170 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 NKAPP1Q8N9T2 125 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 OR2M3Q8NG83 312 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 OR52L1Q8NGH7 329 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 OR5D16Q8NGK9 328 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 CCL17Q92583 94 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 MUCL1Q96DR8 90 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 THTPAQ9BU02 230 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 SLC25A31Q9H0C2 315 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 TMEM138Q9NPI0 162 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 ASF1BQ9NVP2 202 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 MED11Q9P086 117 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 RBM12B-AS1Q9P1G2 102 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 DHRS4-AS1Q9P1J3 65 aa3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 TPRP12270 2363 aaKnown RBP3.93□□□□□ -1.78
VPS35P1-201ENST00000563400 APC2O95996 2303 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 SNRNP200O75643 2136 aaKnown RBP3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 TRAV36DV7A0A075B6V5 113 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 FAM183AA6NL82 134 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 ZNF207O43670 478 aaKnown RBP3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 YIF1AO95070 293 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 OR13C7P0DN81 318 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 CD79AP11912 226 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 FOLR2P14207 255 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 RAB3BP20337 219 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 CA7P43166 264 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 MAP2K4P45985 399 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 RAP1AP62834 184 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 HERPUD1Q15011 391 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 RBMY1FQ15415 496 aaKnown RBP3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 SRSF7Q16629 238 aaKnown RBP eCLIP3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 NDUFA5Q16718 116 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 C6orf99Q4VX62 202 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 ZNF585BQ52M93 769 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 MESTQ5EB52 335 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 OR2B11Q5JQS5 317 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 NHLRC3Q5JS37 347 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 FAM162BQ5T6X4 162 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 ARL9Q6T311 187 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 CLEC19AQ6UXS0 136 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 LRRC18Q8N456 261 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms