RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ARL6IP1Q15041 203 aa12.26□□□□□ -0.45
CLN3-208ENST00000561505 HES5Q5TA89 166 aa12.26□□□□□ -0.45
CLN3-208ENST00000561505 ZNF57Q68EA5 555 aaPredicted RBP12.26□□□□□ -0.45
CLN3-208ENST00000561505 CTRB2Q6GPI1 263 aa12.26□□□□□ -0.45
CLN3-208ENST00000561505 VSTM2AQ8TAG5 236 aa12.26□□□□□ -0.45
CLN3-208ENST00000561505 PRELID3BQ9Y3B1 194 aa12.26□□□□□ -0.45
CLN3-208ENST00000561505 TPRKBQ9Y3C4 175 aa12.26□□□□□ -0.45
CLN3-208ENST00000561505 FRAS1Q86XX4 4008 aa12.26□□□□□ -0.45
CLN3-208ENST00000561505 FCGR3BO75015 233 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 KBTBD11O94819 623 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 GALP22466 123 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 ANKRD55Q3KP44 614 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 FAM106AQ4KMX7 169 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 C19orf35Q6ZS72 473 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 KCTD9Q7L273 389 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 PRSS48Q7RTY5 328 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 UXS1Q8NBZ7 420 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 CACNG8Q8WXS5 425 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 MARC2Q969Z3 335 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 OR2A7Q96R45 310 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 DCSTAMPQ9H295 470 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 ELF5Q9UKW6 265 aaPredicted RBP12.25□□□□□ -0.45
CLN3-208ENST00000561505 HERC2O95714 4834 aa12.25□□□□□ -0.45
CLN3-208ENST00000561505 IGLV11-55A0A075B6I3 123 aa12.24□□□□□ -0.45
CLN3-208ENST00000561505 LOC102724200A0A096LPH7 203 aaPredicted RBP12.24□□□□□ -0.45
CLN3-208ENST00000561505 METTL21EPA6NDL7 271 aa12.24□□□□□ -0.45
CLN3-208ENST00000561505 CGB1A6NKQ9 187 aa12.24□□□□□ -0.45
CLN3-208ENST00000561505 RGS10O43665 173 aa12.24□□□□□ -0.45
CLN3-208ENST00000561505 HSMCR30P0CW71 290 aa12.24□□□□□ -0.45
CLN3-208ENST00000561505 HIST1H1BP16401 226 aaKnown RBP12.24□□□□□ -0.45
CLN3-208ENST00000561505 ARL3P36405 182 aa12.24□□□□□ -0.45
CLN3-208ENST00000561505 RPL27AP46776 148 aaKnown RBP12.24□□□□□ -0.45
CLN3-208ENST00000561505 ELLP55199 621 aaPredicted RBP12.24□□□□□ -0.45
CLN3-208ENST00000561505 OR10A3P58181 314 aa12.24□□□□□ -0.45
CLN3-208ENST00000561505 OR4A47Q6IF82 309 aa12.24□□□□□ -0.45
CLN3-208ENST00000561505 Q6ZWC4 215 aa12.24□□□□□ -0.45
CLN3-208ENST00000561505 VKORC1L1Q8N0U8 176 aa12.24□□□□□ -0.45
CLN3-208ENST00000561505 HSD17B10Q99714 261 aaKnown RBP12.24□□□□□ -0.45
CLN3-208ENST00000561505 MRPS7Q9Y2R9 242 aaKnown RBP12.24□□□□□ -0.45
CLN3-208ENST00000561505 KMT2AQ03164 3969 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 IGKV1D-13A0A0B4J2D9 117 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 PDCD5O14737 125 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 IGKV1-13P0DP09 117 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 AREGP15514 252 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 CD36P16671 472 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 CRHBPP24387 322 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 EWSR1Q01844 656 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLN3-208ENST00000561505 CNIH2Q6PI25 160 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 CLEC19AQ6UXS0 136 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 NR2C2APQ86WQ0 139 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 OR52B4Q8NGK2 314 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 OR4S2Q8NH73 311 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 ST6GALNAC5Q9BVH7 336 aa12.23□□□□□ -0.45
CLN3-208ENST00000561505 DNAH10Q8IVF4 4471 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 TRBV7-1A0A0A6YYK4 115 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 NUPR2A6NF83 97 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 DHFRP00374 187 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 FGF2P09038 288 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 TALDO1P37837 337 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 MSMO1Q15800 293 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 CDNFQ49AH0 187 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 HACD4Q5VWC8 232 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 CEMP1Q6PRD7 247 aaPredicted RBP12.22□□□□□ -0.45
CLN3-208ENST00000561505 ZNF66Q6ZN08 573 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 MFSD4AQ8N468 514 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 EEF1AKMT3Q96AZ1 226 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 DCUN1D5Q9BTE7 237 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 VCXQ9H320 206 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 BET1LQ9NYM9 111 aa12.22□□□□□ -0.45
CLN3-208ENST00000561505 MRPL27Q9P0M9 148 aaKnown RBP12.22□□□□□ -0.45
CLN3-208ENST00000561505 TRDV1A0A1B0GX56 115 aa12.21□□□□□ -0.45
CLN3-208ENST00000561505 NFYAP23511 347 aaPredicted RBP12.21□□□□□ -0.45
CLN3-208ENST00000561505 TBCEQ15813 527 aaPredicted RBP12.21□□□□□ -0.45
CLN3-208ENST00000561505 POU2AF1Q16633 256 aa12.21□□□□□ -0.45
CLN3-208ENST00000561505 TM4SF20Q53R12 229 aa12.21□□□□□ -0.45
CLN3-208ENST00000561505 UNQ9165/PRO28630Q6UXU0 137 aa12.21□□□□□ -0.45
CLN3-208ENST00000561505 ZNF502Q8TBZ5 544 aa12.21□□□□□ -0.45
CLN3-208ENST00000561505 CXorf58Q96LI9 332 aa12.21□□□□□ -0.45
CLN3-208ENST00000561505 ZNF436Q9C0F3 470 aaPredicted RBP12.21□□□□□ -0.45
CLN3-208ENST00000561505 A0A075B6Q4 140 aa12.2□□□□□ -0.46
CLN3-208ENST00000561505 MFSD2BA6NFX1 497 aa12.2□□□□□ -0.46
CLN3-208ENST00000561505 UBE2CO00762 179 aa12.2□□□□□ -0.46
CLN3-208ENST00000561505 RBFOX2O43251 390 aaKnown RBP eCLIP12.2□□□□□ -0.46
CLN3-208ENST00000561505 CLEC3BP05452 202 aa12.2□□□□□ -0.46
CLN3-208ENST00000561505 RAB3BP20337 219 aa12.2□□□□□ -0.46
CLN3-208ENST00000561505 BMI1P35226 326 aa12.2□□□□□ -0.46
CLN3-208ENST00000561505 RPL8P62917 257 aaKnown RBP12.2□□□□□ -0.46
CLN3-208ENST00000561505 BTNL8Q6UX41 500 aa12.2□□□□□ -0.46
CLN3-208ENST00000561505 OR4A5Q8NH83 315 aa12.2□□□□□ -0.46
CLN3-208ENST00000561505 SRSF8Q9BRL6 282 aaKnown RBP12.2□□□□□ -0.46
CLN3-208ENST00000561505 C5orf66Q9H5L9 145 aa12.2□□□□□ -0.46
CLN3-208ENST00000561505 NDUFB11Q9NX14 153 aa12.2□□□□□ -0.46
CLN3-208ENST00000561505 KIR2DL5BA0A0G2JN68 375 aa12.19□□□□□ -0.46
CLN3-208ENST00000561505 KIR2DL5BA0A0G2JPC4 375 aa12.19□□□□□ -0.46
CLN3-208ENST00000561505 A0A0J9YWU9 116 aa12.19□□□□□ -0.46
CLN3-208ENST00000561505 IGLC7A0M8Q6 106 aa12.19□□□□□ -0.46
CLN3-208ENST00000561505 DPPA5A6NC42 116 aa12.19□□□□□ -0.46
CLN3-208ENST00000561505 SSX5O60225 188 aa12.19□□□□□ -0.46
CLN3-208ENST00000561505 SCAF4O95104 1147 aaKnown RBP12.19□□□□□ -0.46
CLN3-208ENST00000561505 LY6G6CO95867 125 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 178.4 ms