RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 SLC6A1P30531 599 aa17.07■□□□□ 0.32
SNX1-206ENST00000559389 CRIP2P52943 208 aaPredicted RBP17.07■□□□□ 0.32
SNX1-206ENST00000559389 KRTAP10-3P60369 221 aa17.07■□□□□ 0.32
SNX1-206ENST00000559389 SUPT4H1P63272 117 aaKnown RBP17.07■□□□□ 0.32
SNX1-206ENST00000559389 MMD2Q8IY49 270 aa17.07■□□□□ 0.32
SNX1-206ENST00000559389 CENPSQ8N2Z9 138 aa17.07■□□□□ 0.32
SNX1-206ENST00000559389 DMBX1Q8NFW5 382 aa17.07■□□□□ 0.32
SNX1-206ENST00000559389 CHPT1Q8WUD6 406 aa17.07■□□□□ 0.32
SNX1-206ENST00000559389 ARPC1AQ92747 370 aa17.07■□□□□ 0.32
SNX1-206ENST00000559389 TMEM222Q9H0R3 208 aa17.07■□□□□ 0.32
SNX1-206ENST00000559389 LINC00527Q9UJ94 153 aa17.07■□□□□ 0.32
SNX1-206ENST00000559389 KRASP01116 189 aa17.06■□□□□ 0.32
SNX1-206ENST00000559389 IL6RP08887 468 aaPredicted RBP17.06■□□□□ 0.32
SNX1-206ENST00000559389 AKR1C4P17516 323 aa17.06■□□□□ 0.32
SNX1-206ENST00000559389 G6PCP35575 357 aa17.06■□□□□ 0.32
SNX1-206ENST00000559389 GNB1P62873 340 aa17.06■□□□□ 0.32
SNX1-206ENST00000559389 FXYD3Q14802 87 aa17.06■□□□□ 0.32
SNX1-206ENST00000559389 TRIM16LQ309B1 348 aa17.06■□□□□ 0.32
SNX1-206ENST00000559389 CADM3Q8N126 398 aa17.06■□□□□ 0.32
SNX1-206ENST00000559389 GLYATL2Q8WU03 294 aa17.06■□□□□ 0.32
SNX1-206ENST00000559389 SEC22AQ96IW7 307 aa17.06■□□□□ 0.32
SNX1-206ENST00000559389 ZNF747Q9BV97 191 aa17.06■□□□□ 0.32
SNX1-206ENST00000559389 EGR2P11161 476 aaPredicted RBP17.05■□□□□ 0.32
SNX1-206ENST00000559389 CFHR3Q02985 330 aa17.05■□□□□ 0.32
SNX1-206ENST00000559389 TNXAQ16473 311 aa17.05■□□□□ 0.32
SNX1-206ENST00000559389 TMEM128Q5BJH2 165 aa17.05■□□□□ 0.32
SNX1-206ENST00000559389 C19orf54Q5BKX5 351 aa17.05■□□□□ 0.32
SNX1-206ENST00000559389 C3orf56Q8N813 242 aa17.05■□□□□ 0.32
SNX1-206ENST00000559389 GRPEL2Q8TAA5 225 aa17.05■□□□□ 0.32
SNX1-206ENST00000559389 ABHD5Q8WTS1 349 aa17.05■□□□□ 0.32
SNX1-206ENST00000559389 PSMB11A5LHX3 300 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 UPK2O00526 184 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 FGF2P09038 288 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 VDAC1P21796 283 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 RPL8P62917 257 aaKnown RBP17.04■□□□□ 0.32
SNX1-206ENST00000559389 DHODHQ02127 395 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 MZT2BQ6NZ67 158 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 SLC25A42Q86VD7 318 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 SGMS2Q8NHU3 365 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 SPATA3Q8NHX4 192 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 LHFPL5Q8TAF8 219 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 TSC22D3Q99576 134 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 FAM103A1Q9BTL3 118 aaKnown RBP17.04■□□□□ 0.32
SNX1-206ENST00000559389 C20orf85Q9H1P6 137 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 FLVCR2Q9UPI3 526 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 KCNIP3Q9Y2W7 256 aa17.04■□□□□ 0.32
SNX1-206ENST00000559389 TRAV3A0A0B4J244 114 aa17.03■□□□□ 0.32
SNX1-206ENST00000559389 TRAV41A0A0B4J266 112 aa17.03■□□□□ 0.32
SNX1-206ENST00000559389 CNIH1O95406 144 aa17.03■□□□□ 0.32
SNX1-206ENST00000559389 CDS2O95674 445 aa17.03■□□□□ 0.32
SNX1-206ENST00000559389 IGKV1-5P01602 117 aa17.03■□□□□ 0.32
SNX1-206ENST00000559389 MAS1LP35410 378 aa17.03■□□□□ 0.32
SNX1-206ENST00000559389 UBE2MP61081 183 aaKnown RBP17.03■□□□□ 0.32
SNX1-206ENST00000559389 TMEM187Q14656 261 aa17.03■□□□□ 0.32
SNX1-206ENST00000559389 C10orf55Q5SWW7 151 aa17.03■□□□□ 0.32
SNX1-206ENST00000559389 C10orf99Q6UWK7 81 aa17.03■□□□□ 0.32
SNX1-206ENST00000559389 CENPVQ7Z7K6 275 aaPredicted RBP17.03■□□□□ 0.32
SNX1-206ENST00000559389 SRSF12Q8WXF0 261 aaKnown RBP17.03■□□□□ 0.32
SNX1-206ENST00000559389 CITED1Q99966 193 aa17.03■□□□□ 0.32
SNX1-206ENST00000559389 GON7Q9BXV9 100 aa17.03■□□□□ 0.32
SNX1-206ENST00000559389 G3V318 75 aa17.02■□□□□ 0.32
SNX1-206ENST00000559389 ACTL6BO94805 426 aa17.02■□□□□ 0.32
SNX1-206ENST00000559389 TCRBP04435 133 aa17.02■□□□□ 0.32
SNX1-206ENST00000559389 P0C879 139 aa17.02■□□□□ 0.32
SNX1-206ENST00000559389 HLA-GP17693 338 aa17.02■□□□□ 0.32
SNX1-206ENST00000559389 SLC35B1P78383 322 aa17.02■□□□□ 0.32
SNX1-206ENST00000559389 SRSF4Q08170 494 aaKnown RBP17.02■□□□□ 0.32
SNX1-206ENST00000559389 PPP1R1AQ13522 171 aa17.02■□□□□ 0.32
SNX1-206ENST00000559389 ECSCRQ19T08 205 aa17.02■□□□□ 0.32
SNX1-206ENST00000559389 OR5AU1Q8NGC0 362 aa17.02■□□□□ 0.32
SNX1-206ENST00000559389 RBPMSQ93062 196 aaKnown RBP17.02■□□□□ 0.32
SNX1-206ENST00000559389 NUBP2Q9Y5Y2 271 aa17.02■□□□□ 0.32
SNX1-206ENST00000559389 WSB1Q9Y6I7 421 aa17.02■□□□□ 0.32
SNX1-206ENST00000559389 FAM240BA0A1B0GVZ2 78 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 FBXO24O75426 580 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 ATG12O94817 140 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 OR9G9P0C7N8 305 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 ANXA3P12429 323 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 VAMP1P23763 118 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 PPIFP30405 207 aaKnown RBP17.01■□□□□ 0.31
SNX1-206ENST00000559389 AKR1C2P52895 323 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 SHISA2Q6UWI4 295 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 H2BFWTQ7Z2G1 175 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 ZNF329Q86UD4 541 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 IL22RA2Q969J5 263 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 TMEM56Q96MV1 263 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 NUDT15Q9NV35 164 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 PRR13Q9NZ81 148 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 TMEM56-RWDD3S4R434 201 aa17.01■□□□□ 0.31
SNX1-206ENST00000559389 COL6A5A8TX70 2615 aa17■□□□□ 0.31
SNX1-206ENST00000559389 SFT2D2O95562 160 aa17■□□□□ 0.31
SNX1-206ENST00000559389 ANXA7P20073 488 aaKnown RBP17■□□□□ 0.31
SNX1-206ENST00000559389 RPL27AP46776 148 aaKnown RBP17■□□□□ 0.31
SNX1-206ENST00000559389 DEFA1P59665 94 aa17■□□□□ 0.31
SNX1-206ENST00000559389 DEFA3P59666 94 aa17■□□□□ 0.31
SNX1-206ENST00000559389 SRPXP78539 464 aa17■□□□□ 0.31
SNX1-206ENST00000559389 TMEM268Q5VZI3 342 aa17■□□□□ 0.31
SNX1-206ENST00000559389 SELENOHQ8IZQ5 122 aaKnown RBP17■□□□□ 0.31
SNX1-206ENST00000559389 LFNGQ8NES3 379 aa17■□□□□ 0.31
SNX1-206ENST00000559389 OR4X2Q8NGF9 303 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms