RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 BTN3A2P78410 334 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 RUNX1Q01196 453 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 GNA12Q03113 381 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 TPRXLQ17RH7 258 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 AGTRAPQ6RW13 159 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 TRAPPC5Q8IUR0 188 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 SLC35F6Q8N357 371 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 OR4X2Q8NGF9 303 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 OR51T1Q8NGJ9 327 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 OR4X1Q8NH49 305 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 ZNF675Q8TD23 568 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 SMCR5Q8TEV8 140 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 OPTNQ96CV9 577 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 IMMP2LQ96T52 175 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 MIEN1Q9BRT3 115 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 ZNF471Q9BX82 626 aaPredicted RBP0.71□□□□□ -2.3
USP3-209ENST00000558925 OR51V1Q9H2C8 321 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 OR51I2Q9H344 312 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 FKBP14Q9NWM8 211 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 PAQR5Q9NXK6 330 aaPredicted RBP0.71□□□□□ -2.3
USP3-209ENST00000558925 PRELID1Q9Y255 219 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 ANGPT4Q9Y264 503 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 KLK5Q9Y337 293 aaPredicted RBP0.71□□□□□ -2.3
USP3-209ENST00000558925 LSM5Q9Y4Y9 91 aaKnown RBP0.71□□□□□ -2.3
USP3-209ENST00000558925 FAM215AQ9Y5M1 114 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 HIVEP2P31629 2446 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 WDR90Q96KV7 1748 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 DOCK10Q96BY6 2186 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 BAZ2BQ9UIF8 2168 aaKnown RBP0.71□□□□□ -2.3
USP3-209ENST00000558925 PLB1Q6P1J6 1458 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 ADAMTS7Q9UKP4 1686 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 CPAMD8Q8IZJ3 1885 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 GBF1Q92538 1859 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 MDC1Q14676 2089 aaKnown RBP0.71□□□□□ -2.3
USP3-209ENST00000558925 BAHCC1Q9P281 2608 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 MAST2Q6P0Q8 1798 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 SLIT2O94813 1529 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 CUL9Q8IWT3 2517 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 SNAPC4Q5SXM2 1469 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 A0A087WUJ7 227 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 IGHV1-69-2A0A0G2JMI3 117 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 A0A1B0GVG6 124 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 SMIM9A6NGZ8 99 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 CLDN24A6NM45 220 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 DISC1C4P0D8 188 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 GOLGA6L19H0YKK7 550 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 H3BT86 120 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 KPNA3O00505 521 aaPredicted RBP0.7□□□□□ -2.3
USP3-209ENST00000558925 FAAHO00519 579 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 CHP2O43745 196 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 RPP14O95059 124 aaKnown RBP0.7□□□□□ -2.3
USP3-209ENST00000558925 NPYP01303 97 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 S100A7P31151 101 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 RPL27AP46776 148 aaKnown RBP0.7□□□□□ -2.3
USP3-209ENST00000558925 HINT1P49773 126 aaPredicted RBP0.7□□□□□ -2.3
USP3-209ENST00000558925 RAB13P51153 203 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 RPS20P60866 119 aaKnown RBP0.7□□□□□ -2.3
USP3-209ENST00000558925 FKBP1AP62942 108 aaKnown RBP0.7□□□□□ -2.3
USP3-209ENST00000558925 KISS1Q15726 138 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 KCNJ8Q15842 424 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 ZNF791Q3KP31 576 aaPredicted RBP0.7□□□□□ -2.3
USP3-209ENST00000558925 C5orf46Q6UWT4 87 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 SSX8Q7RTT4 187 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 S100A7AQ86SG5 101 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 SLC22A24Q8N4F4 322 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 CLDN22Q8N7P3 220 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 OR1L8Q8NGR8 309 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 DGCR14Q96DF8 476 aaKnown RBP0.7□□□□□ -2.3
USP3-209ENST00000558925 IMP4Q96G21 291 aaKnown RBP0.7□□□□□ -2.3
USP3-209ENST00000558925 C8orf76Q96K31 380 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 CNBD2Q96M20 576 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 KLF6Q99612 283 aaPredicted RBP0.7□□□□□ -2.3
USP3-209ENST00000558925 TTTY12Q9BZ98 90 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 OR8D2Q9GZM6 311 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 TMEM222Q9H0R3 208 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 VPS29Q9UBQ0 182 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 TP73-AS1Q9UF72 201 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 NAT8Q9UHE5 227 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 AMMECR1Q9Y4X0 333 aaPredicted RBP0.7□□□□□ -2.3
USP3-209ENST00000558925 SDK1Q7Z5N4 2213 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 RTTNQ86VV8 2226 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 ITGB4P16144 1822 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 WRNQ14191 1432 aaPredicted RBP eCLIP0.7□□□□□ -2.3
USP3-209ENST00000558925 RP1P56715 2156 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 PCDH15Q96QU1 1955 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 SCN10AQ9Y5Y9 1956 aa0.7□□□□□ -2.3
USP3-209ENST00000558925 SORL1Q92673 2214 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 PXDNLA1KZ92 1463 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 GRIN2BQ13224 1484 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 MYH11P35749 1972 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 TMSB15BA0A087X1C1 80 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 TRGV5A0A0B4J1U4 118 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 IGKV1D-43A0A0B4J1Z2 117 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 A0A0J9YY10 115 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 FAM236DA0A1B0GTK5 79 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 A0A1B0GX78 115 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 TMEM235A6NFC5 223 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 SMIM23A6NLE4 172 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 TMEM114B3SHH9 223 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 H3BRN7 92 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms