RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 OR10A7Q8NGE5 316 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 Q8WTZ3 238 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 CITED2Q99967 270 aaPredicted RBP6.01□□□□□ -1.45
VPS13C-206ENST00000558338 SMIM7Q9BQ49 75 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 TXNDC17Q9BRA2 123 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 SPXQ9BT56 116 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 DCTN5Q9BTE1 182 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 SLC25A22Q9H936 323 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 ENY2Q9NPA8 101 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 FREM2Q5SZK8 3169 aa6.01□□□□□ -1.45
VPS13C-206ENST00000558338 INTS1Q8N201 2190 aaKnown RBP6.01□□□□□ -1.45
VPS13C-206ENST00000558338 A4D1N5 150 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 C15orf61A6NNL5 157 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 FNDC10F2Z333 226 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 PRRG2O14669 202 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 KLK10O43240 276 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 HRASP01112 189 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 IFNA10P01566 189 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 IGKV1D-33P01593 117 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 IGKV1-33P01594 117 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 CGB3P0DN86 165 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 CGB7P0DN87 165 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 TNFRSF1AP19438 455 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 OPRK1P41145 380 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 TMPRSS3P57727 454 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 TFF3Q07654 80 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 KIAA0141Q14154 515 aaPredicted RBP6□□□□□ -1.45
VPS13C-206ENST00000558338 POU2AF1Q16633 256 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 TMEM241Q24JQ0 296 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 C17orf58Q2M2W7 97 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 TEX36Q5VZQ5 186 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 WDR25Q64LD2 544 aaPredicted RBP6□□□□□ -1.45
VPS13C-206ENST00000558338 FAM53AQ6NSI3 398 aaPredicted RBP6□□□□□ -1.45
VPS13C-206ENST00000558338 ZNRF1Q8ND25 227 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 DDB2Q92466 427 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 CORO2AQ92828 525 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 RBM14Q96PK6 669 aaKnown RBP6□□□□□ -1.45
VPS13C-206ENST00000558338 LINC00574Q9H8X3 128 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 GCM1Q9NP62 436 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 HEYLQ9NQ87 328 aaPredicted RBP6□□□□□ -1.45
VPS13C-206ENST00000558338 TMEM140Q9NV12 185 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 IDI2-AS1Q9NZ38 188 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 FOXA2Q9Y261 457 aaPredicted RBP6□□□□□ -1.45
VPS13C-206ENST00000558338 TRBV24-1A0A075B6N3 115 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 PDE6DO43924 150 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 VENTXO95231 258 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 IGHV1-46P01743 117 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 CD55P08174 381 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 S100PP25815 95 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 VDAC2P45880 294 aaPredicted RBP6□□□□□ -1.45
VPS13C-206ENST00000558338 ATP5IP56385 69 aaPredicted RBP6□□□□□ -1.45
VPS13C-206ENST00000558338 CD81P60033 236 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 HOXA4Q00056 320 aaPredicted RBP6□□□□□ -1.45
VPS13C-206ENST00000558338 TCF15Q12870 199 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 RPL39P5Q59GN2 51 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 RAB24Q969Q5 203 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 GAFA1Q96PS6 74 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 TMPRSS5Q9H3S3 457 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 TCF19Q9Y242 345 aa6□□□□□ -1.45
VPS13C-206ENST00000558338 ELOA3CA0A087WX78 387 aaPredicted RBP5.99□□□□□ -1.45
VPS13C-206ENST00000558338 SAA2-SAA4A0A096LPE2 208 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 A0A1W2PPV4 95 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 hADV38S2A0JD32 116 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 F6UZH7 168 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 PROP1O75360 226 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 ACTL6BO94805 426 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 SAA2P0DJI9 122 aaPredicted RBP5.99□□□□□ -1.45
VPS13C-206ENST00000558338 NBL1P41271 181 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 ERVFRD-1P60508 538 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 MRPS11P82912 194 aaKnown RBP5.99□□□□□ -1.45
VPS13C-206ENST00000558338 RAB31Q13636 194 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 RTL8BQ17RB0 113 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 BSXQ3C1V8 233 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 ZNF788Q6ZQV5 615 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 SSX9Q7RTT3 188 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 OR4F5Q8NH21 305 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 NANPQ8TBE9 248 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 BTF3L4Q96K17 158 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 FAM210BQ96KR6 192 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 OR5B12Q96R08 314 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 OR4F4Q96R69 305 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 GAL3ST2Q9H3Q3 398 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 PRNDQ9UKY0 176 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 LINC00312Q9Y6C7 94 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 TANC2Q9HCD6 1990 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 ZNF318Q5VUA4 2279 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 FAM186AA6NE01 2351 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 GTF3C1Q12789 2109 aa5.99□□□□□ -1.45
VPS13C-206ENST00000558338 TRAV38-1A0A0B4J264 116 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 A0A1W2PPE3 182 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 C16orf97H3BN30 126 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 MT-CO2P00403 227 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 CXCL1P09341 107 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 HOXA5P20719 270 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 BMP5P22003 454 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 NPY1RP25929 384 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 HSPE1P61604 102 aaKnown RBP5.98□□□□□ -1.45
VPS13C-206ENST00000558338 TLE1Q04724 770 aa5.98□□□□□ -1.45
VPS13C-206ENST00000558338 MEF2CQ06413 473 aaPredicted RBP5.98□□□□□ -1.45
VPS13C-206ENST00000558338 HNF4GQ14541 408 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms