RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 TNNC1P63316 161 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 SMAGPQ0VAQ4 97 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 NUP160Q12769 1436 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 ACSM3Q53FZ2 586 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 SAPCD1Q5SSQ6 148 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 LCN8Q6JVE9 175 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 TMEM251Q8N6I4 163 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 CDRT4Q8N9R6 151 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 SPERTQ8NA61 448 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 ATP6V1C2Q8NEY4 427 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 FAM210AQ96ND0 272 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 TMEM70Q9BUB7 260 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 ENPP5Q9UJA9 477 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 ZNF462Q96JM2 2506 aa-0.17□□□□□ -2.44
VPS13C-205ENST00000558088 WDR90Q96KV7 1748 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 COL7A1Q02388 2944 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 TMED7-TICAM2A0A0A6YYA0 188 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 FUOMA2VDF0 154 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 H0YIV9 168 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 ADAP1O75689 374 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 SFTPCP11686 197 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 HLA-DMBP28068 263 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 S100A7P31151 101 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 RAB13P51153 203 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 EFNA4P52798 201 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 RAB4BP61018 213 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 SPINK9Q5DT21 86 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 SPINK6Q6UWN8 80 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 GPHB5Q86YW7 130 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 OR52K2Q8NGK3 314 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 MROQ9BYG7 248 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 CXorf21Q9HAI6 301 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 PARVAQ9NVD7 372 aa-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 PCYT1BQ9Y5K3 369 aaPredicted RBP-0.18□□□□□ -2.44
VPS13C-205ENST00000558088 NPATQ14207 1427 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 TRBV6-8A0A0A6YYG3 113 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 GSTTP1A0A1W2PQM5 241 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 DAPL1A0PJW8 107 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 F5H5K5 113 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 I3L521 148 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 LEPROTO15243 131 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 NSA2O95478 260 aaKnown RBP-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 SNAI1O95863 264 aaPredicted RBP-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 MSMBP08118 114 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 ASAH2BP0C7U1 165 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 CALRP27797 417 aaKnown RBP-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 JOSD1Q15040 202 aaPredicted RBP-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 VAMP3Q15836 100 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 DNAL1Q4LDG9 190 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 LCN15Q6UWW0 184 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 LRRC20Q8TCA0 184 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 SLC50A1Q9BRV3 221 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 UGT2B28Q9BY64 529 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 METTL9Q9H1A3 318 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 UBQLN4Q9NRR5 601 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 CDC42SE1Q9NRR8 79 aa-0.19□□□□□ -2.44
VPS13C-205ENST00000558088 C19orf84I3L1E1 186 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 CSTAP01040 98 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 LINC00614P0C842 121 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 HIST1H1CP16403 213 aaKnown RBP-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 FXYD2P54710 66 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 DLX6P56179 175 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 DMTNQ08495 405 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 TEX261Q6UWH6 196 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 LINC00311Q8N616 119 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 OR1M1Q8NGA1 313 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 ZNF418Q8TF45 676 aaPredicted RBP-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 TMEM239Q8WW34 195 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 TMEM106AQ96A25 262 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 GNB1LQ9BYB4 327 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 U3KQ87 197 aa-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 MACF1Q9UPN3 7388 aaKnown RBP-0.2□□□□□ -2.44
VPS13C-205ENST00000558088 A0A0D9SG42 100 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 CCDC160A6NGH7 325 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 COX7A2LO14548 114 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 ATP6V1G2O95670 118 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 ATP5G1P05496 136 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 CCL5P13501 91 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 CXCL2P19875 107 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 SYT1P21579 422 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 RPS4Y1P22090 263 aaKnown RBP-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 NFYAP23511 347 aaPredicted RBP-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 CASQ1P31415 396 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 H2BFSP57053 126 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 SUPT4H1P63272 117 aaKnown RBP-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 FABP5Q01469 135 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 EXOC3L4Q17RC7 722 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 SSX8Q7RTT4 187 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 ANKRD7Q92527 254 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 TMEM147Q9BVK8 224 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 TLNRD1Q9H1K6 362 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 HRASLSQ9HDD0 168 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 PRELID1Q9Y255 219 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 FRAS1Q86XX4 4008 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 CNTRLQ7Z7A1 2325 aa-0.21□□□□□ -2.44
VPS13C-205ENST00000558088 IGSF10Q6WRI0 2623 aa-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 C5orf49A4QMS7 147 aa-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 UGT2B11O75310 529 aa-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 SPI1P17947 270 aa-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 CXCL3P19876 107 aa-0.22□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms