RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PRR14LQ5THK1 2151 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 IGHV1-69-2A0A0G2JMI3 117 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 LOC102723971A0A1B0GUV8 181 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 PHOX2AO14813 284 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 TMPRSS2O15393 492 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 RBFOX2O43251 390 aaKnown RBP eCLIP10.47□□□□□ -0.735e-15■■■■■ 33.3
SHMT2-229ENST00000557348 TRGC2P03986 189 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 CXCL1P09341 107 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 ATP6V0CP27449 155 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 ERVFRD-1P60508 538 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 RPL23AP62750 156 aaKnown RBP10.47□□□□□ -0.73
SHMT2-229ENST00000557348 ACOT6Q3I5F7 207 aaPredicted RBP10.47□□□□□ -0.73
SHMT2-229ENST00000557348 SPNS3Q6ZMD2 512 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 RFESDQ8TAC1 157 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 ADTRPQ96IZ2 230 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 CCL13Q99616 98 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 PARD6GQ9BYG4 376 aaPredicted RBP10.47□□□□□ -0.73
SHMT2-229ENST00000557348 PARP12Q9H0J9 701 aaKnown RBP10.47□□□□□ -0.73
SHMT2-229ENST00000557348 SLC25A10Q9UBX3 287 aaPredicted RBP10.47□□□□□ -0.73
SHMT2-229ENST00000557348 PSG11Q9UQ72 335 aa10.47□□□□□ -0.73
SHMT2-229ENST00000557348 PRRC2CQ9Y520 2896 aaKnown RBP10.46□□□□□ -0.73
SHMT2-229ENST00000557348 LAMA5O15230 3695 aa10.46□□□□□ -0.73
SHMT2-229ENST00000557348 MGAQ8IWI9 3026 aa10.46□□□□□ -0.73
SHMT2-229ENST00000557348 FAM90A9PA6NNJ1 464 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 ATXN7O15265 892 aaPredicted RBP10.46□□□□□ -0.74
SHMT2-229ENST00000557348 TFF1P04155 84 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 RNF224P0DH78 156 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 FABP4P15090 132 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 LOXL3P58215 753 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 TAS2R30P59541 319 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 HOXA4Q00056 320 aaPredicted RBP10.46□□□□□ -0.74
SHMT2-229ENST00000557348 IQCJQ1A5X6 159 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 ZNF585BQ52M93 769 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 BTNL3Q6UXE8 466 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 CENPVQ7Z7K6 275 aaPredicted RBP10.46□□□□□ -0.74
SHMT2-229ENST00000557348 DEFB108BQ8NET1 73 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 MBD3L1Q8WWY6 194 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 CCL17Q92583 94 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 GPR146Q96CH1 333 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 PSMG3Q9BT73 122 aaPredicted RBP10.46□□□□□ -0.74
SHMT2-229ENST00000557348 IDI2-AS1Q9NZ38 188 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 CADP27708 2225 aa10.46□□□□□ -0.74
SHMT2-229ENST00000557348 NDUFB3O43676 98 aa10.45□□□□□ -0.74
SHMT2-229ENST00000557348 CLDN14O95500 239 aa10.45□□□□□ -0.74
SHMT2-229ENST00000557348 EPHA1P21709 976 aa10.45□□□□□ -0.74
SHMT2-229ENST00000557348 FAM3BP58499 235 aaPredicted RBP10.45□□□□□ -0.74
SHMT2-229ENST00000557348 C17orf58Q2M2W7 97 aa10.45□□□□□ -0.74
SHMT2-229ENST00000557348 FAM201AQ5SY85 155 aa10.45□□□□□ -0.74
SHMT2-229ENST00000557348 ABHD5Q8WTS1 349 aa10.45□□□□□ -0.74
SHMT2-229ENST00000557348 TMEM18Q96B42 140 aa10.45□□□□□ -0.74
SHMT2-229ENST00000557348 IMMP2LQ96T52 175 aa10.45□□□□□ -0.74
SHMT2-229ENST00000557348 ABHD14AQ9BUJ0 271 aa10.45□□□□□ -0.74
SHMT2-229ENST00000557348 PIEZO2Q9H5I5 2752 aa10.45□□□□□ -0.74
SHMT2-229ENST00000557348 IGHV3-43A0A0B4J1X8 118 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 DEFB108AA8MXU0 73 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 RAB29O14966 203 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 SSSCA1O60232 199 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 IGKV1-39P01597 117 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 IGKV1D-39P04432 117 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 IGHV3-43DP0DP04 118 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 NDUFB7P17568 137 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 MRPS11P82912 194 aaKnown RBP10.44□□□□□ -0.74
SHMT2-229ENST00000557348 SERF2P84101 59 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 TFF3Q07654 80 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 FGFRL1Q8N441 504 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 FAM216BQ8N7L0 139 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 OR1P1Q8NH06 330 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 FRZBQ92765 325 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 PINX1Q96BK5 328 aaKnown RBP10.44□□□□□ -0.74
SHMT2-229ENST00000557348 GPHA2Q96T91 129 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 RARRES2Q99969 163 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 DCTN5Q9BTE1 182 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 RAB1BQ9H0U4 201 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 SDF2L1Q9HCN8 221 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 CACNG5Q9UF02 275 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 M0R143 59 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 SYNGR2O43760 224 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 HPRT1P00492 218 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 LINC00614P0C842 121 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 GZMBP10144 247 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 RPL31P62899 125 aaKnown RBP10.44□□□□□ -0.74
SHMT2-229ENST00000557348 TMEM252Q8N6L7 170 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 CYB561D1Q8N8Q1 229 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 ANAPC16Q96DE5 110 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 MISP3Q96FF7 219 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 IFI27L2Q9H2X8 130 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.44□□□□□ -0.74
SHMT2-229ENST00000557348 CBLN4Q9NTU7 201 aa10.44□□□□□ -0.74
SHMT2-229ENST00000557348 RPUSD1Q9UJJ7 312 aaKnown RBP10.44□□□□□ -0.74
SHMT2-229ENST00000557348 PLCE1Q9P212 2302 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 IGSF10Q6WRI0 2623 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 TGIF2-C20orf24A0A0A6YYL0 155 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 TNFRSF13BO14836 293 aaPredicted RBP10.43□□□□□ -0.74
SHMT2-229ENST00000557348 GOSR1O95249 250 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 IFNA5P01569 189 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 IGKV1-5P01602 117 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 TYMSP04818 313 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 DUTP33316 252 aaKnown RBP10.43□□□□□ -0.74
SHMT2-229ENST00000557348 THBS3P49746 956 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 FHITP49789 147 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms