RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 IGKV3OR2-268A0A0C4DH90 116 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 H3BPC8 53 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 KCNK1O00180 336 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 KPNA3O00505 521 aaPredicted RBP0.58□□□□□ -2.32
SCFD1-216ENST00000555550 SLC16A4O15374 487 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 CLPSP04118 112 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 ISG15P05161 165 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 TPM3P06753 285 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 OR5G3P0C626 314 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 FAM228BP0C875 321 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 RPS12P25398 132 aaKnown RBP0.58□□□□□ -2.32
SCFD1-216ENST00000555550 DDTP30046 118 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 CA7P43166 264 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 XCL1P47992 114 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 MARCKSL1P49006 195 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 SULT1A2P50226 295 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 MAGOHP61326 146 aaKnown RBP0.58□□□□□ -2.32
SCFD1-216ENST00000555550 RELAQ04206 551 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 PDK2Q15119 407 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 ACSM3Q53FZ2 586 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 C1orf195Q5TG92 126 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 PTRHD1Q6GMV3 140 aaKnown RBP0.58□□□□□ -2.32
SCFD1-216ENST00000555550 OR10K2Q6IF99 312 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 TNFAIP8L2Q6P589 184 aaPredicted RBP0.58□□□□□ -2.32
SCFD1-216ENST00000555550 LRRC34Q8IZ02 419 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 PACRGLQ8N7B6 248 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 CNEP1R1Q8N9A8 125 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 OR2D3Q8NGH3 330 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 JOSD2Q8TAC2 188 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 PIGXQ8TBF5 258 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 ASB17Q8WXJ9 295 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 SLC35B4Q969S0 331 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 GNPNAT1Q96EK6 184 aaPredicted RBP0.58□□□□□ -2.32
SCFD1-216ENST00000555550 SFRP2Q96HF1 295 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 ERMAPQ96PL5 475 aaPredicted RBP0.58□□□□□ -2.32
SCFD1-216ENST00000555550 MED18Q9BUE0 208 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 TIPINQ9BVW5 301 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 MND1Q9BWT6 205 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 ZNHIT6Q9NWK9 470 aaKnown RBP0.58□□□□□ -2.32
SCFD1-216ENST00000555550 NKIRAS1Q9NYS0 192 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 EMC3Q9P0I2 261 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 TP73-AS1Q9UF72 201 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 C3orf18Q9UK00 162 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 DKKL1Q9UK85 242 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 POLR1DQ9Y2S0 133 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 KDM5BQ9UGL1 1544 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 MTUS2Q5JR59 1369 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 ROBO3Q96MS0 1386 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 TGIF2-C20orf24A0A0A6YYL0 155 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 C5orf49A4QMS7 147 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 C11orf86A6NJI1 115 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 ZNF705FA8MVS1 300 aaPredicted RBP0.57□□□□□ -2.32
SCFD1-216ENST00000555550 OR11H12B2RN74 326 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 LRRN3E7EW58 273 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 TRAPPC2LH3BP13 241 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 COX7A2LO14548 114 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 UBFD1O14562 309 aaKnown RBP0.57□□□□□ -2.32
SCFD1-216ENST00000555550 ACOX3O15254 700 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 PLA2G10O15496 165 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 GNRH2O43555 120 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 CHP2O43745 196 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 STX10O60499 249 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 E2F6O75461 281 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 NSA2O95478 260 aaKnown RBP0.57□□□□□ -2.32
SCFD1-216ENST00000555550 TCRBP04435 133 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 IL9P15248 144 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 MAP2K4P45985 399 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 RPL27AP46776 148 aaKnown RBP0.57□□□□□ -2.32
SCFD1-216ENST00000555550 BLVRAP53004 296 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 TMEM33P57088 247 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 TPM4P67936 248 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 SLC35A2P78381 396 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 ZNF90Q03938 601 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 MAPK14Q16539 360 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 ZNF791Q3KP31 576 aaPredicted RBP0.57□□□□□ -2.32
SCFD1-216ENST00000555550 DNAL1Q4LDG9 190 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 CCDC122Q5T0U0 273 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 COMMD7Q86VX2 200 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 DAND5Q8N907 189 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 ATP6V1C2Q8NEY4 427 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 OR11H2Q8NH07 326 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 RASSF5Q8WWW0 418 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 SLC35G5Q96KT7 338 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 TTTY13Q9BZ97 58 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 OR8D2Q9GZM6 311 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 MRPL27Q9P0M9 148 aaKnown RBP0.57□□□□□ -2.32
SCFD1-216ENST00000555550 FIS1Q9Y3D6 152 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 POLR3HQ9Y535 204 aaPredicted RBP0.57□□□□□ -2.32
SCFD1-216ENST00000555550 DLG5Q8TDM6 1919 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 DISP1Q96F81 1524 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 MAST2Q6P0Q8 1798 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 RTTNQ86VV8 2226 aa0.57□□□□□ -2.32
SCFD1-216ENST00000555550 PCF11O94913 1555 aaKnown RBP0.57□□□□□ -2.32
SCFD1-216ENST00000555550 CPAMD8Q8IZJ3 1885 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 ADGRL3Q9HAR2 1447 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 PTPRSQ13332 1948 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 GRIN2BQ13224 1484 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 IGKV3-7A0A075B6H7 116 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 A0A087WUJ7 227 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 OR4C45A6NMZ5 311 aa0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms