RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 ZMAT4Q9H898 229 aa9.13□□□□□ -0.95
CKAP4-202ENST00000552828 SLC35D1Q9NTN3 355 aa9.13□□□□□ -0.95
CKAP4-202ENST00000552828 RBMX2Q9Y388 322 aaKnown RBP9.13□□□□□ -0.95
CKAP4-202ENST00000552828 GABARAPH6UMI1 98 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 LGALS1P09382 135 aaKnown RBP9.12□□□□□ -0.95
CKAP4-202ENST00000552828 TNFSF8P32971 234 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 SLURP1P55000 103 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 FXYD4P59646 89 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 HERV-K104P61576 105 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 RPS16P62249 146 aaKnown RBP9.12□□□□□ -0.95
CKAP4-202ENST00000552828 NDPQ00604 133 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 MSMO1Q15800 293 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 RTL8BQ17RB0 113 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 ACTBL2Q562R1 376 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 RNASE12Q5GAN4 147 aaKnown RBP9.12□□□□□ -0.95
CKAP4-202ENST00000552828 ZBTB34Q8NCN2 500 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 C5orf30Q96GV9 206 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 TSNAXQ99598 290 aaKnown RBP9.12□□□□□ -0.95
CKAP4-202ENST00000552828 HSD17B10Q99714 261 aaKnown RBP9.12□□□□□ -0.95
CKAP4-202ENST00000552828 SLC5A7Q9GZV3 580 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 KLK11Q9UBX7 282 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 MTFP1Q9UDX5 166 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 FBXO7Q9Y3I1 522 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 NUBP2Q9Y5Y2 271 aa9.12□□□□□ -0.95
CKAP4-202ENST00000552828 FABP12A6NFH5 140 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 A8MZ25 164 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 RRHO14718 337 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 ARPC1BO15143 372 aaKnown RBP9.11□□□□□ -0.95
CKAP4-202ENST00000552828 CTDSPLO15194 276 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 IGLV2-14P01704 120 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 IGKV1-16P04430 117 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 EGR2P11161 476 aaPredicted RBP9.11□□□□□ -0.95
CKAP4-202ENST00000552828 LGALS7P47929 136 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 EIF2B2P49770 351 aaKnown RBP9.11□□□□□ -0.95
CKAP4-202ENST00000552828 TSPAN5P62079 268 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 CX3CL1P78423 397 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 SSBP1Q04837 148 aaKnown RBP9.11□□□□□ -0.95
CKAP4-202ENST00000552828 PLGLAQ15195 96 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 ZNF66Q6ZN08 573 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 BVESQ8NE79 360 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 ARPC1AQ92747 370 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 ZNF2Q9BSG1 426 aaPredicted RBP9.11□□□□□ -0.95
CKAP4-202ENST00000552828 CCL28Q9NRJ3 127 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 FOXA2Q9Y261 457 aaPredicted RBP9.11□□□□□ -0.95
CKAP4-202ENST00000552828 PRELID3BQ9Y3B1 194 aa9.11□□□□□ -0.95
CKAP4-202ENST00000552828 IGHV4OR15-8A0A075B7B6 117 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 A0A087WW49 117 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 LINC00473A8K010 186 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 SHOXO15266 292 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 SPDEFO95238 335 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 HSPB1P04792 205 aaKnown RBP9.1□□□□□ -0.95
CKAP4-202ENST00000552828 IFNA6P05013 189 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 TBPP20226 339 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 PTBP1P26599 531 aaKnown RBP eCLIP9.1□□□□□ -0.95
CKAP4-202ENST00000552828 PSG5Q15238 335 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 AKIRIN2Q53H80 203 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 KCTD9Q7L273 389 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 TMEM17Q86X19 198 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 Q8N1Y9 231 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 SMIM4Q8WVI0 70 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 DDB2Q92466 427 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 MOB3AQ96BX8 217 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 SDHCQ99643 169 aaPredicted RBP9.1□□□□□ -0.95
CKAP4-202ENST00000552828 FBXL15Q9H469 300 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 EDA2RQ9HAV5 297 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 C19orf73Q9NVV2 129 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 TAS2R8Q9NYW2 309 aa9.1□□□□□ -0.95
CKAP4-202ENST00000552828 A0A1W2PN81 502 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 M0QYG6 137 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 FCN1O00602 326 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 FCGR3BO75015 233 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 GNRHRP30968 328 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 CHRNA7P36544 502 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 TAS2R19P59542 299 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 RPL30P62888 115 aaKnown RBP9.09□□□□□ -0.95
CKAP4-202ENST00000552828 TMEM267Q0VDI3 215 aaPredicted RBP9.09□□□□□ -0.95
CKAP4-202ENST00000552828 EIF4EBP1Q13541 118 aaPredicted RBP9.09□□□□□ -0.95
CKAP4-202ENST00000552828 ECSCRQ19T08 205 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 TMEM177Q53S58 311 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 RNASE10Q5GAN6 216 aaKnown RBP9.09□□□□□ -0.95
CKAP4-202ENST00000552828 LPCAT3Q6P1A2 487 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 AKAP14Q86UN6 197 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 GDPD1Q8N9F7 314 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 TMEM229BQ8NBD8 167 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 TCTEX1D2Q8WW35 142 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 RHOVQ96L33 236 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 HARBI1Q96MB7 349 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 SOSTQ9BQB4 213 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 GAR1Q9NY12 217 aaKnown RBP9.09□□□□□ -0.95
CKAP4-202ENST00000552828 METTL1Q9UBP6 276 aaKnown RBP9.09□□□□□ -0.95
CKAP4-202ENST00000552828 V9GYH0 126 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 TNCP24821 2201 aa9.09□□□□□ -0.95
CKAP4-202ENST00000552828 TNFSF12O43508 249 aa9.08□□□□□ -0.96
CKAP4-202ENST00000552828 GSTZ1O43708 216 aaPredicted RBP9.08□□□□□ -0.96
CKAP4-202ENST00000552828 SLC25A17O43808 307 aa9.08□□□□□ -0.96
CKAP4-202ENST00000552828 ATP6V1G1O75348 118 aa9.08□□□□□ -0.96
CKAP4-202ENST00000552828 CRYZL1O95825 349 aa9.08□□□□□ -0.96
CKAP4-202ENST00000552828 IGLV1-51P01701 117 aa9.08□□□□□ -0.96
CKAP4-202ENST00000552828 CD3DP04234 171 aa9.08□□□□□ -0.96
CKAP4-202ENST00000552828 TRAPPC2P0DI81 140 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms