RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 OR2F1Q13607 317 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 CST6Q15828 149 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 HIST3H3Q16695 136 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 KRTAP5-1Q6L8H4 278 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 HIST2H3AQ71DI3 136 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 LRRC34Q8IZ02 419 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 ZNF664Q8N3J9 261 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 DEFB123Q8N688 67 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 LINC00304Q8N9R0 145 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 CMTM2Q8TAZ6 248 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 LMX1AQ8TE12 382 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 NKX6-2Q9C056 277 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-210ENST00000552045 C11orf1Q9H5F2 150 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 FKBP14Q9NWM8 211 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 TOPAZ1Q8N9V7 1692 aa3.22□□□□□ -1.89
LIMA1-210ENST00000552045 PTPRJQ12913 1337 aa3.21□□□□□ -1.89
LIMA1-210ENST00000552045 ZFYVE9O95405 1425 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 TGIF2-C20orf24A0A0A6YYL0 155 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 LOC102725191A0A1B0GVB3 256 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 IGLV6-57P01721 117 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 HLA-DQB2P05538 268 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 SLCO1A2P46721 670 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 HAAOP46952 286 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 CDK9P50750 372 aaKnown RBP3.21□□□□□ -1.9
LIMA1-210ENST00000552045 PRDX4Q13162 271 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 PLPPR5Q32ZL2 321 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 SAPCD1Q5SSQ6 148 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 TRAPPC5Q8IUR0 188 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 LY6G5BQ8NDX9 201 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 OR11H1Q8NG94 326 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 TVP23CQ96ET8 276 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 DIRAS2Q96HU8 199 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 SHROOM3Q8TF72 1996 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 CCDC18Q5T9S5 1454 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 SZT2Q5T011 3432 aa3.21□□□□□ -1.9
LIMA1-210ENST00000552045 A0A1W2PQL4 384 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-210ENST00000552045 OR6C6A6NF89 314 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 DISC1C4P0D8 188 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 APOMO95445 188 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 SLC25A16P16260 332 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 CCL1P22362 96 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 NPPCP23582 126 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 CRYBB3P26998 211 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 HOXA6P31267 233 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 MAP2K4P45985 399 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 MARCKSL1P49006 195 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 LSM6P62312 80 aaKnown RBP3.2□□□□□ -1.9
LIMA1-210ENST00000552045 STX5Q13190 355 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 RASL11AQ6T310 242 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 OR2T27Q8NH04 317 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 OR10A6Q8NH74 314 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 FNDC9Q8TBE3 224 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 CHMP6Q96FZ7 201 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 IMP4Q96G21 291 aaKnown RBP3.2□□□□□ -1.9
LIMA1-210ENST00000552045 PKMYT1Q99640 499 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 SMDT1Q9H4I9 107 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 SNX12Q9UMY4 172 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 ZSWIM8A7E2V4 1837 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 TNRC6CQ9HCJ0 1690 aaKnown RBP3.2□□□□□ -1.9
LIMA1-210ENST00000552045 NLRC5Q86WI3 1866 aa3.2□□□□□ -1.9
LIMA1-210ENST00000552045 HFM1A2PYH4 1435 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 DHRS12A0PJE2 317 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 TMEM114B3SHH9 223 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 OMPP47874 163 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 SULT1A1P50225 295 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 HOXC5Q00444 222 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 HTR4Q13639 388 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 SPIN3Q5JUX0 258 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 TMEM31Q5JXX7 168 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 CCDC121Q6ZUS5 278 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 MSRB3Q8IXL7 192 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 OR51D1Q8NGF3 324 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 OR4K13Q8NH42 304 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 MGLLQ99685 303 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 SLC2A9Q9NRM0 540 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 ANAPC10Q9UM13 185 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 UNC80Q8N2C7 3258 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 DICER1Q9UPY3 1922 aaKnown RBP3.19□□□□□ -1.9
LIMA1-210ENST00000552045 NRAPQ86VF7 1730 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 LMTK2Q8IWU2 1503 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 DUOX2Q9NRD8 1548 aa3.19□□□□□ -1.9
LIMA1-210ENST00000552045 ATP7BP35670 1465 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 CCNB3Q8WWL7 1395 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 C17orf98A8MV24 154 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 SLC17A3O00476 420 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 TP53I11O14683 189 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 LY6HO94772 140 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 CDS2O95674 445 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 TCRBP04435 133 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 CTXN2P0C2S0 81 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 AP3S2P59780 193 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 AESQ08117 197 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 FAM229BQ4G0N7 80 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 C5orf46Q6UWT4 87 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 AMTNQ6UX39 209 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 DEFB125Q8N687 156 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 OR10D4PQ8NGN7 298 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 CCL13Q99616 98 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 MND1Q9BWT6 205 aa3.18□□□□□ -1.9
LIMA1-210ENST00000552045 C16orf95Q9H693 158 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms