RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 CITED2Q99967 270 aaPredicted RBP12.75□□□□□ -0.37
CHMP1A-209ENST00000550872 C5orf66Q9H5L9 145 aa12.75□□□□□ -0.37
CHMP1A-209ENST00000550872 ZNF430Q9H8G1 570 aaPredicted RBP12.75□□□□□ -0.37
CHMP1A-209ENST00000550872 FAM212BQ9NTI7 297 aaPredicted RBP12.75□□□□□ -0.37
CHMP1A-209ENST00000550872 NUBP2Q9Y5Y2 271 aa12.75□□□□□ -0.37
CHMP1A-209ENST00000550872 TEX13DA0A0J9YY54 714 aaPredicted RBP12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 C3orf85A0A1B0GTC6 90 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 TCRBV4S1A1TA0A5B7 111 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 NAP1L6A6NFF2 107 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 KBTBD11O94819 623 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 KRASP01116 189 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 SERPINE2P07093 398 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 CD83Q01151 205 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 POU2AF1Q16633 256 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 TCTEX1D4Q5JR98 221 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 OR4A47Q6IF82 309 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 TEX38Q6PEX7 206 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 UNQ5815/PRO19632Q6UWF5 114 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 COMMD1Q8N668 190 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 SGMS2Q8NHU3 365 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 CCDC32Q9BV29 185 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 BET1LQ9NYM9 111 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 VSIG4Q9Y279 399 aa12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 TET2Q6N021 2002 aaPredicted RBP12.74□□□□□ -0.37
CHMP1A-209ENST00000550872 CENPXA8MT69 81 aa12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 H0Y980 276 aa12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 CRIP2P52943 208 aaPredicted RBP12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 SSBP2P81877 361 aaPredicted RBP12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 ZNF846Q147U1 533 aa12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 SP6Q3SY56 376 aa12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 KHDC1LQ5JSQ8 128 aa12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 LFNGQ8NES3 379 aa12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 OR4A5Q8NH83 315 aa12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 TP53RKQ96S44 253 aa12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 SLC25A21Q9BQT8 299 aaPredicted RBP12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 C7orf50Q9BRJ6 194 aaKnown RBP12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 WDR12Q9GZL7 423 aaKnown RBP12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 TMEM140Q9NV12 185 aa12.73□□□□□ -0.37
CHMP1A-209ENST00000550872 MSGN1A6NI15 193 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 MARCH11A6NNE9 402 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 UPK2O00526 184 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 IGHG4P01861 327 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 OPN1MWP04001 364 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 ELANEP08246 267 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 OPN1MW2P0DN77 364 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 OPN1MW3P0DN78 364 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 CD40LGP29965 261 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 PPIFP30405 207 aaKnown RBP12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 MAS1LP35410 378 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 G6PCP35575 357 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 RPL8P62917 257 aaKnown RBP12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 CFHR3Q02985 330 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 NSUN5P1Q3KNT7 163 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 AKIRIN2Q53H80 203 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 NDUFA11Q86Y39 141 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 MINDY2Q8NBR6 621 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 ADAD2Q8NCV1 583 aaKnown RBP12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 SRSF12Q8WXF0 261 aaKnown RBP12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 PHB2Q99623 299 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 NAA60Q9H7X0 242 aa12.72□□□□□ -0.37
CHMP1A-209ENST00000550872 WNK1Q9H4A3 2382 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 TRAV3A0A0B4J244 114 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 A0A1W2PN81 502 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 A0A1W2PRX2 142 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 CRYM-AS1A6NIL9 109 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 M0QZ24 198 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 B3GALNT1O75752 331 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 IGKV1-39P01597 117 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 IGKV1D-39P04432 117 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 IL6RP08887 468 aaPredicted RBP12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 AKR1C4P17516 323 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 CHRNA7P36544 502 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 CCR6P51684 374 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 FOXE3Q13461 319 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 TRIM16LQ309B1 348 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 C19orf54Q5BKX5 351 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 CXorf66Q5JRM2 361 aaPredicted RBP12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 C10orf55Q5SWW7 151 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 SGPP2Q8IWX5 399 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 FOXA2Q9Y261 457 aaPredicted RBP12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 KCNIP3Q9Y2W7 256 aa12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 TSSC4Q9Y5U2 329 aaPredicted RBP12.71□□□□□ -0.37
CHMP1A-209ENST00000550872 PLA2G10O15496 165 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 SNAPC5O75971 98 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 OR5AC1P0C628 307 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 PF4V1P10720 104 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 HLA-GP17693 338 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 UCP1P25874 307 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 RPL27AP46776 148 aaKnown RBP12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 RBMS2Q15434 407 aaKnown RBP12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 TMEM65Q6PI78 240 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 LCNL1Q6ZST4 164 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 TMED4Q7Z7H5 227 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 OR5T1Q8NG75 326 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 TMEM230Q96A57 120 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 SEC22AQ96IW7 307 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 TMEM68Q96MH6 324 aa12.7□□□□□ -0.38
CHMP1A-209ENST00000550872 LYRM1O43325 122 aa12.69□□□□□ -0.38
CHMP1A-209ENST00000550872 SOX15O60248 233 aa12.69□□□□□ -0.38
CHMP1A-209ENST00000550872 ATG12O94817 140 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms