RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 NECAP2Q9NVZ3 263 aa6.73□□□□□ -1.33
PDLIM5-221ENST00000542407 TMEM242Q9NWH2 141 aa6.73□□□□□ -1.33
PDLIM5-221ENST00000542407 DHRS3O75911 302 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 OPRM1P35372 400 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 C6orf201Q7Z4U5 140 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 OR1F12Q8NHA8 337 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 VN1R17PQ8TDU5 208 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 B5MCH6 92 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 IGHV3-9P01782 118 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 ZNF728P0DKX0 622 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 PLA2G5P39877 138 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 CNN1P51911 297 aaKnown RBP6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 FOXG1P55316 489 aaPredicted RBP6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 SRPXP78539 464 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 SPATA31B1PQ5VZV4 182 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 TMEM42Q69YG0 159 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 ZNF787Q6DD87 383 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 DPPA3Q6W0C5 159 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 SAXO1Q8IYX7 474 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 MUC15Q8N387 334 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 TMEM178AQ8NBL3 297 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 TMEM170AQ8WVE7 144 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 SPTSSAQ969W0 71 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 DEFB127Q9H1M4 99 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 NAA60Q9H7X0 242 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 ZFAND3Q9H8U3 227 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 PRSS50Q9UI38 385 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 MCTS1Q9ULC4 181 aaKnown RBP6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 LOC400499M0QZD8 3231 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 RTTNQ86VV8 2226 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 ODAMA1E959 279 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 ZNF503-AS2A6NEH8 195 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 SLC17A3O00476 420 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 NUPR1O60356 82 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 MRPL33O75394 65 aaKnown RBP6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 WISP2O76076 250 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 IGHG3P01860 377 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 PFN1P07737 140 aaKnown RBP6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 BCL2P10415 239 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 ZNF83P51522 516 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 CCL11P51671 97 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 PAX9P55771 341 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 ZNF154Q13106 437 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 TMEM187Q14656 261 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 MRPL23Q16540 153 aaKnown RBP6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 TEX43Q6ZNM6 134 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 OR1B1Q8NGR6 318 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 NEU4Q8WWR8 484 aaPredicted RBP6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 VAMP8Q9BV40 100 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 COL25A1Q9BXS0 654 aaPredicted RBP6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 CTDSP1Q9GZU7 261 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 PATZ1Q9HBE1 687 aaKnown RBP6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 HSPB8Q9UJY1 196 aa6.72□□□□□ -1.33
PDLIM5-221ENST00000542407 KNTC1P50748 2209 aa6.71□□□□□ -1.33
PDLIM5-221ENST00000542407 TRGV5A0A0B4J1U4 118 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 H3BP45 60 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 FAM3BP58499 235 aaPredicted RBP6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 RNPS1Q15287 305 aaKnown RBP6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 ZNF788Q6ZQV5 615 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 C1QL2Q7Z5L3 287 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 RNF183Q96D59 192 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 DERL1Q9BUN8 251 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 PECRQ9BY49 303 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 EP300Q09472 2414 aaPredicted RBP6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 CFAP47Q6ZTR5 3102 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 F2RP25116 425 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 NKX2-1P43699 371 aaPredicted RBP6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 AMTP48728 403 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 TESK1Q15569 626 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 ACOT6Q3I5F7 207 aaPredicted RBP6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 ASCL5Q7RTU5 278 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 TMEM252Q8N6L7 170 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 ZNF709Q8N972 641 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 OR8G5Q8NG78 346 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 OR51G1Q8NGK1 321 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 OR2AE1Q8NHA4 323 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 C10orf35Q96D05 121 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 GNPNAT1Q96EK6 184 aaPredicted RBP6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 PSMG3Q9BT73 122 aaPredicted RBP6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 LIME1Q9H400 295 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 ANAPC10Q9UM13 185 aa6.71□□□□□ -1.34
PDLIM5-221ENST00000542407 PITX3O75364 302 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 ECI1P42126 302 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 HINT1P49773 126 aaPredicted RBP6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 HNRNPA3P51991 378 aaKnown RBP6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 PCBD1P61457 104 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 TMEM41BQ5BJD5 291 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 CXorf66Q5JRM2 361 aaPredicted RBP6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 AMMECR1LQ6DCA0 310 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 LIAT1Q6ZQX7 453 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 OR2T10Q8NGZ9 312 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 PRDM14Q9GZV8 571 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 PLEKHF2Q9H8W4 249 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 Q9N2K0 584 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 PIGLQ9Y2B2 252 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 GRIFINA4D1Z8 144 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 MAP1LC3B2A6NCE7 125 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 MSTNO14793 375 aa6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 HMGB3O15347 200 aaKnown RBP6.7□□□□□ -1.34
PDLIM5-221ENST00000542407 SEC61GP60059 68 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms