RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 TCL1AP56279 114 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 TMEM14EPQ6UXP3 125 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 C1QL4Q86Z23 238 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 GCSAMQ8N6F7 178 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 STARD4Q96DR4 205 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 HSPB7Q9UBY9 170 aa11.24□□□□□ -0.61
PTPN1-202ENST00000541713 IGHV3-72A0A0B4J1Y9 119 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 NHLRC2Q8NBF2 726 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 Q8TCH9 128 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 OR51M1Q9H341 326 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 ANKHD1Q8IWZ3 2542 aaKnown RBP11.23□□□□□ -0.61
PTPN1-202ENST00000541713 TRAV17A0A0B4J275 112 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 KLK10O43240 276 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 SERF2P84101 59 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 OR10A7Q8NGE5 316 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 TMEM140Q9NV12 185 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 OR6C3Q9NZP0 311 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 ARHGAP32A7KAX9 2087 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 PLAUP00749 431 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 CEACAM1P13688 526 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 IGFBPL1Q8WX77 278 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 NAT8Q9UHE5 227 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 PTPRQQ9UMZ3 2332 aa11.23□□□□□ -0.61
PTPN1-202ENST00000541713 CTXND1A0A1B0GTU2 59 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 C15orf62A8K5M9 175 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 ACSF3Q4G176 576 aaPredicted RBP11.22□□□□□ -0.61
PTPN1-202ENST00000541713 MRPL41Q8IXM3 137 aaKnown RBP11.22□□□□□ -0.61
PTPN1-202ENST00000541713 OR4P4Q8NGL7 312 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 CCL17Q92583 94 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 HSD17B10Q99714 261 aaKnown RBP11.22□□□□□ -0.61
PTPN1-202ENST00000541713 HIPK2Q9H2X6 1198 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 DCHS2Q6V1P9 2916 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 SCO2A0A1W2PP80 73 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 FRMD6-AS1P0C7T7 363 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 DUTP33316 252 aaKnown RBP11.22□□□□□ -0.61
PTPN1-202ENST00000541713 OR5I1Q13606 314 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 PMS2P11Q13670 270 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 PLA2G2CQ5R387 149 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 SEBOXQ9HB31 216 aaPredicted RBP11.22□□□□□ -0.61
PTPN1-202ENST00000541713 SEPSECSQ9HD40 501 aaKnown RBP11.22□□□□□ -0.61
PTPN1-202ENST00000541713 ZNF883P0CG24 379 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 RAB4BP61018 213 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 GNB2P62879 340 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 MORN2Q502X0 79 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 SLC35E4Q6ICL7 350 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 ZNF474Q6S9Z5 364 aaPredicted RBP11.22□□□□□ -0.61
PTPN1-202ENST00000541713 HIST3H2BBQ8N257 126 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 TCEAL7Q9BRU2 100 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 RPH3ALQ9UNE2 315 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 TP53TG5Q9Y2B4 290 aa11.22□□□□□ -0.61
PTPN1-202ENST00000541713 TRBV6-6A0A0A6YYG2 114 aa11.21□□□□□ -0.61
PTPN1-202ENST00000541713 PAX6P26367 422 aa11.21□□□□□ -0.61
PTPN1-202ENST00000541713 CD82P27701 267 aa11.21□□□□□ -0.61
PTPN1-202ENST00000541713 DEFA6Q01524 100 aa11.21□□□□□ -0.61
PTPN1-202ENST00000541713 OR10W1Q8NGF6 305 aa11.21□□□□□ -0.61
PTPN1-202ENST00000541713 MBD3L1Q8WWY6 194 aa11.21□□□□□ -0.61
PTPN1-202ENST00000541713 ACY3Q96HD9 319 aa11.21□□□□□ -0.61
PTPN1-202ENST00000541713 AGMATQ9BSE5 352 aa11.21□□□□□ -0.61
PTPN1-202ENST00000541713 ENY2Q9NPA8 101 aa11.21□□□□□ -0.61
PTPN1-202ENST00000541713 PXMP4Q9Y6I8 212 aa11.21□□□□□ -0.61
PTPN1-202ENST00000541713 TNRC6BQ9UPQ9 1833 aaKnown RBP11.21□□□□□ -0.61
PTPN1-202ENST00000541713 IGKV1-16P04430 117 aa11.21□□□□□ -0.62
PTPN1-202ENST00000541713 CCL3L1P16619 93 aa11.21□□□□□ -0.62
PTPN1-202ENST00000541713 KLF3P57682 345 aaPredicted RBP11.21□□□□□ -0.62
PTPN1-202ENST00000541713 SSTP61278 116 aa11.21□□□□□ -0.62
PTPN1-202ENST00000541713 NEIL1Q96FI4 390 aaPredicted RBP11.21□□□□□ -0.62
PTPN1-202ENST00000541713 YPEL4Q96NS1 127 aa11.21□□□□□ -0.62
PTPN1-202ENST00000541713 CALYQ9NYX4 217 aa11.21□□□□□ -0.62
PTPN1-202ENST00000541713 DKK4Q9UBT3 224 aa11.21□□□□□ -0.62
PTPN1-202ENST00000541713 TNFSF13O75888 250 aa11.21□□□□□ -0.62
PTPN1-202ENST00000541713 TOX4O94842 621 aa11.21□□□□□ -0.62
PTPN1-202ENST00000541713 IGKV3-15P01624 115 aa11.21□□□□□ -0.62
PTPN1-202ENST00000541713 REG1AP05451 166 aa11.21□□□□□ -0.62
PTPN1-202ENST00000541713 PRR33A8MZF0 331 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 SEC14L6B5MCN3 397 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 H3BTX0 84 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 KBTBD11O94819 623 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 GNB1P62873 340 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 SRSF7Q16629 238 aaKnown RBP eCLIP11.2□□□□□ -0.62
PTPN1-202ENST00000541713 ACOT6Q3I5F7 207 aaPredicted RBP11.2□□□□□ -0.62
PTPN1-202ENST00000541713 SEM1Q6ZVN7 128 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 SNIP1Q8TAD8 396 aaKnown RBP11.2□□□□□ -0.62
PTPN1-202ENST00000541713 MRPL37Q9BZE1 423 aaKnown RBP11.2□□□□□ -0.62
PTPN1-202ENST00000541713 SERTAD4Q9NUC0 356 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 OR7C2O60412 319 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 IGFBP2P18065 325 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 LGALS4P56470 323 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 MRPS11P82912 194 aaKnown RBP11.2□□□□□ -0.62
PTPN1-202ENST00000541713 FXYD3Q14802 87 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 HIST1H2BLQ99880 126 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 PSMG3Q9BT73 122 aaPredicted RBP11.2□□□□□ -0.62
PTPN1-202ENST00000541713 TCF19Q9Y242 345 aa11.2□□□□□ -0.62
PTPN1-202ENST00000541713 SAA2-SAA4A0A096LPE2 208 aa11.19□□□□□ -0.62
PTPN1-202ENST00000541713 AHRRA9YTQ3 701 aa11.19□□□□□ -0.62
PTPN1-202ENST00000541713 SAA2P0DJI9 122 aaPredicted RBP11.19□□□□□ -0.62
PTPN1-202ENST00000541713 TNFAIP6P98066 277 aaPredicted RBP11.19□□□□□ -0.62
PTPN1-202ENST00000541713 KIAA1644Q3SXP7 199 aa11.19□□□□□ -0.62
PTPN1-202ENST00000541713 CT45A1Q5HYN5 189 aa11.19□□□□□ -0.62
PTPN1-202ENST00000541713 C10orf55Q5SWW7 151 aa11.19□□□□□ -0.62
PTPN1-202ENST00000541713 C19orf35Q6ZS72 473 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms