RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 ALKBH2Q6NS38 261 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 IL36BQ9NZH7 164 aa9.38□□□□□ -0.91
SYNE1-237ENST00000539504 YTHDF2Q9Y5A9 579 aaKnown RBP9.38□□□□□ -0.91
SYNE1-237ENST00000539504 A0A1B0GWJ7 208 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 TFPI2P48307 235 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 PSG7Q13046 419 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 VWC2Q2TAL6 325 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 OR4P4Q8NGL7 312 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 COQ2Q96H96 371 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 ZNF586Q9NXT0 402 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 MT-CO2P00403 227 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 FRMD6-AS1P0C7T7 363 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 STAG3L2P0CL84 134 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 STAG3L3P0CL85 134 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 COL8A2P25067 703 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 YPEL3P61236 119 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-237ENST00000539504 RPEL1Q2QD12 228 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 KRTCAP3Q53RY4 240 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 SPATA31B1PQ5VZV4 182 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 SLC35E4Q6ICL7 350 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 MGST2Q99735 147 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 SERTAD4Q9NUC0 356 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 METRNQ9UJH8 293 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 GCHFRP30047 84 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 OPRK1P41145 380 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 AMTP48728 403 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 FOXF2Q12947 444 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 ARSJQ5FYB0 599 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-237ENST00000539504 MMD2Q8IY49 270 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 GCNT2Q8N0V5 402 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 RAB1CQ92928 201 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 RBM14Q96PK6 669 aaKnown RBP9.37□□□□□ -0.91
SYNE1-237ENST00000539504 GGTLC1Q9BX51 225 aa9.37□□□□□ -0.91
SYNE1-237ENST00000539504 FREM2Q5SZK8 3169 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 TIMM8AO60220 97 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-237ENST00000539504 MPDU1O75352 247 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 FABP6P51161 128 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 RAB31Q13636 194 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 TPTE2P1Q5T6R2 138 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 DIRC2Q96SL1 478 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 TUBG2Q9NRH3 451 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 MPV17P39210 176 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 MEOX1P50221 254 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 RPL19P84098 196 aaKnown RBP9.36□□□□□ -0.91
SYNE1-237ENST00000539504 TXNDC17Q9BRA2 123 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 SEPSECSQ9HD40 501 aaKnown RBP9.36□□□□□ -0.91
SYNE1-237ENST00000539504 ENY2Q9NPA8 101 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 TP53TG3Q9ULZ0 132 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 TNRC6AQ8NDV7 1962 aaKnown RBP9.36□□□□□ -0.91
SYNE1-237ENST00000539504 DIRC3C9JPN6 131 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 RHOBP62745 196 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 Q6ZR03 302 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 TDHQ8IZJ6 230 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 TXN2Q99757 166 aa9.36□□□□□ -0.91
SYNE1-237ENST00000539504 PRR14LQ5THK1 2151 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 ZDBF2Q9HCK1 2354 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 TRAV3A0A0B4J244 114 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 FOXH1O75593 365 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 SUMO1P63165 101 aaKnown RBP9.35□□□□□ -0.91
SYNE1-237ENST00000539504 FXYD3Q14802 87 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 TCTEX1D1Q8N7M0 179 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 Q8N7P7 452 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 C20orf144Q9BQM9 153 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 LPAR2Q9HBW0 351 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 TRAV34A0A0B4J273 112 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 K7EN84 100 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 IL6RP08887 468 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-237ENST00000539504 MGST1P10620 155 aaKnown RBP9.35□□□□□ -0.91
SYNE1-237ENST00000539504 NTF3P20783 257 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 GNG4P50150 75 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 RPL39P5Q59GN2 51 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 DMRTA1Q5VZB9 504 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 KLF14Q8TD94 323 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-237ENST00000539504 S1PR3Q99500 378 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 LRFN3Q9BTN0 628 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 FRYQ5TBA9 3013 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 CGAP01215 116 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 BTF3P20290 206 aaKnown RBP9.35□□□□□ -0.91
SYNE1-237ENST00000539504 MRPL54Q6P161 138 aaKnown RBP9.35□□□□□ -0.91
SYNE1-237ENST00000539504 TEX43Q6ZNM6 134 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 DOLPP1Q86YN1 238 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 STPG3Q8N7X2 389 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 PLEKHA3Q9HB20 300 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 GP6Q9HCN6 339 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 NPVFQ9HCQ7 196 aa9.35□□□□□ -0.91
SYNE1-237ENST00000539504 ZNF253O75346 499 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 AGFG2O95081 481 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 CER1O95813 267 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 HOXC12P31275 282 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 BRS3P32247 399 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 ACP7Q6ZNF0 438 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 GNB4Q9HAV0 340 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 CRYBB3P26998 211 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 DUTP33316 252 aaKnown RBP9.34□□□□□ -0.91
SYNE1-237ENST00000539504 SELENOTP62341 195 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 EIF4EBP1Q13541 118 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-237ENST00000539504 PSG5Q15238 335 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 GABRA6Q16445 453 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 SMIM21Q3B7S5 101 aa9.34□□□□□ -0.91
SYNE1-237ENST00000539504 TEPPQ6URK8 271 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms