RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 TNFSF18Q9UNG2 199 aa13.83□□□□□ -0.2
CLN6-202ENST00000538696 RCL1Q9Y2P8 373 aaKnown RBP13.83□□□□□ -0.2
CLN6-202ENST00000538696 H0YJW9 148 aa13.82□□□□□ -0.2
CLN6-202ENST00000538696 TIMM23O14925 209 aa13.82□□□□□ -0.2
CLN6-202ENST00000538696 ATG12O94817 140 aa13.82□□□□□ -0.2
CLN6-202ENST00000538696 CRYZL1O95825 349 aa13.82□□□□□ -0.2
CLN6-202ENST00000538696 LRRC75BQ2VPJ9 315 aa13.82□□□□□ -0.2
CLN6-202ENST00000538696 CXorf66Q5JRM2 361 aaPredicted RBP13.82□□□□□ -0.2
CLN6-202ENST00000538696 ZDHHC16Q969W1 377 aa13.82□□□□□ -0.2
CLN6-202ENST00000538696 POMT1Q9Y6A1 747 aa13.82□□□□□ -0.2
CLN6-202ENST00000538696 IGHV3-72A0A0B4J1Y9 119 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 RNF222A6NCQ9 220 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 L7N2F9 121 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 KCNAB3O43448 404 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 DEDDO75618 318 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 PET100P0DJ07 73 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 NKX2-1P43699 371 aaPredicted RBP13.81□□□□□ -0.2
CLN6-202ENST00000538696 DYNLT3P51808 116 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 HABP2Q14520 560 aaPredicted RBP13.81□□□□□ -0.2
CLN6-202ENST00000538696 FBLN7Q53RD9 439 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 MOB3BQ86TA1 216 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 SSX3Q99909 188 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 MFFQ9GZY8 342 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 MXRA5Q9NR99 2828 aa13.81□□□□□ -0.2
CLN6-202ENST00000538696 MARCH11A6NNE9 402 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 H3BUX3 64 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 ST8SIA3O43173 380 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 IGHV4-59P01825 116 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 APOA2P02652 100 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 IER3P46695 156 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 RAB13P51153 203 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 ARHGDIBP52566 201 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 POLR2GP62487 172 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLN6-202ENST00000538696 ID3Q02535 119 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 AANATQ16613 207 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 RTL8BQ17RB0 113 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 TMUB2Q71RG4 321 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 SSX9Q7RTT3 188 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 H2BFWTQ7Z2G1 175 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 DMBX1Q8NFW5 382 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 OR5AN1Q8NGI8 311 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 PIFOQ8TCI5 191 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 MAGT1Q9H0U3 335 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 C11orf1Q9H5F2 150 aa13.8□□□□□ -0.2
CLN6-202ENST00000538696 MSGN1A6NI15 193 aa13.79□□□□□ -0.2
CLN6-202ENST00000538696 HOXA3O43365 443 aaPredicted RBP13.79□□□□□ -0.2
CLN6-202ENST00000538696 OR9G9P0C7N8 305 aa13.79□□□□□ -0.2
CLN6-202ENST00000538696 NQO2P16083 231 aa13.79□□□□□ -0.2
CLN6-202ENST00000538696 CD24P25063 80 aa13.79□□□□□ -0.2
CLN6-202ENST00000538696 ERVK-16P61578 105 aa13.79□□□□□ -0.2
CLN6-202ENST00000538696 IFITM2Q01629 132 aa13.79□□□□□ -0.2
CLN6-202ENST00000538696 DHRS7BQ6IAN0 325 aaPredicted RBP13.79□□□□□ -0.2
CLN6-202ENST00000538696 VKORC1L1Q8N0U8 176 aa13.79□□□□□ -0.2
CLN6-202ENST00000538696 ZFP57Q9NU63 452 aa13.79□□□□□ -0.2
CLN6-202ENST00000538696 FAM90A9PA6NNJ1 464 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 SSSCA1O60232 199 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 TSC22D2O75157 780 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 VENTXO95231 258 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 RLN2P04090 185 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 IGKV1-16P04430 117 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 SNRNP70P08621 437 aaKnown RBP13.78□□□□□ -0.2
CLN6-202ENST00000538696 RRASP10301 218 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 BRS3P32247 399 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 AP2S1P53680 142 aaPredicted RBP13.78□□□□□ -0.2
CLN6-202ENST00000538696 OPCMLQ14982 345 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 ACOT7LQ6ZUV0 252 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 KCNRGQ8N5I3 272 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 ZNF418Q8TF45 676 aaPredicted RBP13.78□□□□□ -0.2
CLN6-202ENST00000538696 ESM1Q9NQ30 184 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 TMEM140Q9NV12 185 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 COA4Q9NYJ1 87 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 NSG2Q9Y328 171 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 ZFHX3Q15911 3703 aa13.78□□□□□ -0.2
CLN6-202ENST00000538696 TRAV3A0A0B4J244 114 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 DNAJC9-AS1A6NH13 148 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 E5RGE8 158 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 H7C2Y5 167 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 OR2F2O95006 317 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 IGKV1D-33P01593 117 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 IGKV1-33P01594 117 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 CD1BP29016 333 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 OR2B8PP59922 312 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 TAGLNQ01995 201 aaKnown RBP13.77□□□□□ -0.21
CLN6-202ENST00000538696 OR2F1Q13607 317 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 ZNF345Q14585 488 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 POU2AF1Q16633 256 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 RBMS3Q6XE24 437 aaKnown RBP13.77□□□□□ -0.21
CLN6-202ENST00000538696 PDPNQ86YL7 162 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 SSMEM1Q8WWF3 244 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 TCF19Q9Y242 345 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 WASHC3Q9Y3C0 194 aa13.77□□□□□ -0.21
CLN6-202ENST00000538696 SRRM4A7MD48 611 aaKnown RBP13.76□□□□□ -0.21
CLN6-202ENST00000538696 HKR1P10072 659 aa13.76□□□□□ -0.21
CLN6-202ENST00000538696 S100A11P31949 105 aa13.76□□□□□ -0.21
CLN6-202ENST00000538696 HILS1P60008 231 aa13.76□□□□□ -0.21
CLN6-202ENST00000538696 LY6EQ16553 131 aa13.76□□□□□ -0.21
CLN6-202ENST00000538696 TMEM177Q53S58 311 aa13.76□□□□□ -0.21
CLN6-202ENST00000538696 THNSL2Q86YJ6 484 aa13.76□□□□□ -0.21
CLN6-202ENST00000538696 LURAP1LQ8IV03 231 aa13.76□□□□□ -0.21
CLN6-202ENST00000538696 TMEM86BQ8N661 226 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms