RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 ARL8BQ9NVJ2 186 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 FKBP14Q9NWM8 211 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 PPP1R14DQ9NXH3 145 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 TAS2R4Q9NYW5 299 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 WARS2Q9UGM6 360 aaKnown RBP4.57□□□□□ -1.68
CD44-237ENST00000534082 RAB21Q9UL25 225 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 TBC1D24Q9ULP9 559 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 LRRC42Q9Y546 428 aa4.57□□□□□ -1.68
CD44-237ENST00000534082 IGKV3-7A0A075B6H7 116 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 TRBV7-1A0A0A6YYK4 115 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 HMX3A6NHT5 357 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 SRRM4A7MD48 611 aaKnown RBP4.56□□□□□ -1.68
CD44-237ENST00000534082 J3KRW8 73 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 ACTL6BO94805 426 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 CLEC3BP05452 202 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 RPA2P15927 270 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 FUSP35637 526 aaKnown RBP eCLIP4.56□□□□□ -1.68
CD44-237ENST00000534082 ZNF93P35789 620 aaPredicted RBP4.56□□□□□ -1.68
CD44-237ENST00000534082 SOX2P48431 317 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 UBE2KP61086 200 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 CBX3Q13185 183 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 PTGES3Q15185 160 aaKnown RBP4.56□□□□□ -1.68
CD44-237ENST00000534082 VMA21Q3ZAQ7 101 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 TMEM41BQ5BJD5 291 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 DDI2Q5TDH0 399 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 LEMD1Q68G75 181 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 ZNF66Q6ZN08 573 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 CEACAM19Q7Z692 300 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 ATP6V1G3Q96LB4 118 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 OR14A2Q96R54 314 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 IL4I1Q96RQ9 567 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 ZNF436Q9C0F3 470 aaPredicted RBP4.56□□□□□ -1.68
CD44-237ENST00000534082 C11orf54Q9H0W9 315 aaPredicted RBP4.56□□□□□ -1.68
CD44-237ENST00000534082 ZNF430Q9H8G1 570 aaPredicted RBP4.56□□□□□ -1.68
CD44-237ENST00000534082 SLC2A9Q9NRM0 540 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 FGFR1OP2Q9NVK5 253 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 OR1A1Q9P1Q5 309 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 ZNF221Q9UK13 617 aa4.56□□□□□ -1.68
CD44-237ENST00000534082 IGHV3OR16-8A0A075B7F1 116 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 DPPA5A6NC42 116 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 NPIPB5A8MRT5 1133 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 TEX22C9J3V5 150 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 SLC16A6O15403 523 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 ZNF207O43670 478 aaKnown RBP4.55□□□□□ -1.68
CD44-237ENST00000534082 CREBL2O60519 120 aaPredicted RBP4.55□□□□□ -1.68
CD44-237ENST00000534082 CST1P01037 141 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 GLAP06280 429 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 SPP1P10451 314 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 HTN3P15516 51 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 FUT3P21217 361 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 PRKACGP22612 351 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 HAMPP81172 84 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 EFNB1P98172 346 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 ICAM4Q14773 271 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 RTL8BQ17RB0 113 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 SIGIRRQ6IA17 410 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 TMEM88Q6PEY1 159 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 PLET1Q6UQ28 207 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 SSX9Q7RTT3 188 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 STHQ8IWL8 128 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 TEX45Q8NA69 505 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 C15orf53Q8NAA6 179 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 ZBTB8BQ8NAP8 495 aaPredicted RBP4.55□□□□□ -1.68
CD44-237ENST00000534082 PPP1R14BQ96C90 147 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 CMTM5Q96DZ9 223 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 CXorf58Q96LI9 332 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 OR2A7Q96R45 310 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 RNF2Q99496 336 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 ELAC2Q9BQ52 826 aaKnown RBP4.55□□□□□ -1.68
CD44-237ENST00000534082 C20orf24Q9BUV8 137 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 KRTAP3-1Q9BYR8 98 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 TMEM14BQ9NUH8 114 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 CLEC5AQ9NY25 188 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 ETV7Q9Y603 341 aa4.55□□□□□ -1.68
CD44-237ENST00000534082 FAT4Q6V0I7 4981 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 GNGT2O14610 69 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 ATP8B1O43520 1251 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 CCDC22O60826 627 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 PDCD6O75340 191 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 DHFRP00374 187 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 ANXA8P13928 327 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 AREGP15514 252 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 CEACAM6P40199 344 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 ETV1P50549 477 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 DEFB131AP59861 70 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 PPP3R1P63098 170 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 GPR176Q14439 515 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 C12orf73Q69YU5 71 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 TRPT1Q86TN4 253 aaKnown RBP4.54□□□□□ -1.68
CD44-237ENST00000534082 SPATA24Q86W54 205 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 MMD2Q8IY49 270 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 GBGT1Q8N5D6 347 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 SETD6Q8TBK2 473 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 ZNF502Q8TBZ5 544 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 C4orf36Q96KX1 117 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 FYTTD1Q96QD9 318 aaKnown RBP4.54□□□□□ -1.68
CD44-237ENST00000534082 PDCD1LG2Q9BQ51 273 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 SELENOIQ9C0D9 397 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 BANF2Q9H503 90 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 TMEM138Q9NPI0 162 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms