RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 NDUFS7O75251 213 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 IGLV1-47P01700 117 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 ZNF616Q08AN1 781 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 TMEM177Q53S58 311 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 SLC25A24Q6NUK1 477 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 OR10P1Q8NGE3 313 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 AIFM2Q9BRQ8 373 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 FAM208BQ5VWN6 2430 aa16.81■□□□□ 0.28
VPS28-209ENST00000528142 DLX1P56177 255 aa16.81■□□□□ 0.28
VPS28-209ENST00000528142 HSPE1P61604 102 aaKnown RBP16.81■□□□□ 0.28
VPS28-209ENST00000528142 AKR1C1Q04828 323 aa16.81■□□□□ 0.28
VPS28-209ENST00000528142 PUSL1Q8N0Z8 303 aaKnown RBP16.81■□□□□ 0.28
VPS28-209ENST00000528142 FAM213BQ8TBF2 198 aa16.81■□□□□ 0.28
VPS28-209ENST00000528142 PINX1Q96BK5 328 aaKnown RBP16.81■□□□□ 0.28
VPS28-209ENST00000528142 PCGF1Q9BSM1 259 aa16.81■□□□□ 0.28
VPS28-209ENST00000528142 RSG1Q9BU20 258 aa16.81■□□□□ 0.28
VPS28-209ENST00000528142 BET1LQ9NYM9 111 aa16.81■□□□□ 0.28
VPS28-209ENST00000528142 UTP20O75691 2785 aaKnown RBP16.8■□□□□ 0.28
VPS28-209ENST00000528142 MALRD1Q5VYJ5 2156 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 TMEM218A2RU14 115 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 LIPFP07098 398 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 VWC2Q2TAL6 325 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 HLA-DRB5Q30154 266 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 PDPNQ86YL7 162 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 PSMG3Q9BT73 122 aaPredicted RBP16.8■□□□□ 0.28
VPS28-209ENST00000528142 TMEM147Q9BVK8 224 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 HIPK2Q9H2X6 1198 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 PRNDQ9UKY0 176 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 FBXO7Q9Y3I1 522 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 H7C2Y5 167 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 AGPAT2O15120 278 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 TSPAN15O95858 294 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 SAA1P0DJI8 122 aaPredicted RBP16.8■□□□□ 0.28
VPS28-209ENST00000528142 IL3RAP26951 378 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 EFNA4P52798 201 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 PRRX1P54821 245 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 RPS16P62249 146 aaKnown RBP16.8■□□□□ 0.28
VPS28-209ENST00000528142 TGIF2LXQ8IUE1 241 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 LHX4Q969G2 390 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 FLYWCH2Q96CP2 140 aaKnown RBP16.8■□□□□ 0.28
VPS28-209ENST00000528142 CLCC1Q96S66 551 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 CLEC7AQ9BXN2 247 aa16.8■□□□□ 0.28
VPS28-209ENST00000528142 DCHS2Q6V1P9 2916 aa16.79■□□□□ 0.28
VPS28-209ENST00000528142 RPP30P78346 268 aaKnown RBP16.79■□□□□ 0.28
VPS28-209ENST00000528142 COMMD1Q8N668 190 aa16.79■□□□□ 0.28
VPS28-209ENST00000528142 BEND2Q8NDZ0 799 aa16.79■□□□□ 0.28
VPS28-209ENST00000528142 TAF15Q92804 592 aaKnown RBP eCLIP16.79■□□□□ 0.28
VPS28-209ENST00000528142 HARBI1Q96MB7 349 aa16.79■□□□□ 0.28
VPS28-209ENST00000528142 HEYLQ9NQ87 328 aaPredicted RBP16.79■□□□□ 0.28
VPS28-209ENST00000528142 ZNF257Q9Y2Q1 563 aa16.79■□□□□ 0.28
VPS28-209ENST00000528142 OR51B2Q9Y5P1 312 aa16.79■□□□□ 0.28
VPS28-209ENST00000528142 UBE2L5PA0A1B0GUS4 154 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 OVOL3O00110 214 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 KBTBD11O94819 623 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 SCAF4O95104 1147 aaKnown RBP16.78■□□□□ 0.28
VPS28-209ENST00000528142 CD5P06127 495 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 MYOD1P15172 320 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 SNCAP37840 140 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 GPR6P46095 362 aaPredicted RBP16.78■□□□□ 0.28
VPS28-209ENST00000528142 AKR1C8PQ5T2L2 129 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 SP5Q6BEB4 398 aaPredicted RBP16.78■□□□□ 0.28
VPS28-209ENST00000528142 DPPA3Q6W0C5 159 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 Q8N7P7 452 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 OR4C13Q8NGP0 309 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 NARS2Q96I59 477 aaKnown RBP16.78■□□□□ 0.28
VPS28-209ENST00000528142 SSBP3Q9BWW4 388 aaPredicted RBP16.78■□□□□ 0.28
VPS28-209ENST00000528142 TMEM231Q9H6L2 316 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 WASHC3Q9Y3C0 194 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 FAM96BQ9Y3D0 163 aa16.78■□□□□ 0.28
VPS28-209ENST00000528142 SPTAN1Q13813 2472 aaKnown RBP16.78■□□□□ 0.28
VPS28-209ENST00000528142 hCG_1809904A0A1W2PP81 198 aa16.77■□□□□ 0.28
VPS28-209ENST00000528142 A0A1W2PPE2 198 aa16.77■□□□□ 0.28
VPS28-209ENST00000528142 A0A1W2PR64 198 aa16.77■□□□□ 0.28
VPS28-209ENST00000528142 A0A1W2PRV1 198 aa16.77■□□□□ 0.28
VPS28-209ENST00000528142 RRHO14718 337 aa16.77■□□□□ 0.28
VPS28-209ENST00000528142 IFNA10P01566 189 aa16.77■□□□□ 0.28
VPS28-209ENST00000528142 MDKP21741 143 aaPredicted RBP16.77■□□□□ 0.28
VPS28-209ENST00000528142 HOXA1P49639 335 aaPredicted RBP16.77■□□□□ 0.28
VPS28-209ENST00000528142 PRB3Q04118 309 aaPredicted RBP16.77■□□□□ 0.28
VPS28-209ENST00000528142 CENPVQ7Z7K6 275 aaPredicted RBP16.77■□□□□ 0.28
VPS28-209ENST00000528142 TMEM170AQ8WVE7 144 aa16.77■□□□□ 0.28
VPS28-209ENST00000528142 SCRT1Q9BWW7 348 aa16.77■□□□□ 0.28
VPS28-209ENST00000528142 NARFLQ9H6Q4 476 aa16.77■□□□□ 0.28
VPS28-209ENST00000528142 UQCC1Q9NVA1 299 aa16.77■□□□□ 0.28
VPS28-209ENST00000528142 RNASEK-C17orf49H0YIS7 233 aa16.77■□□□□ 0.27
VPS28-209ENST00000528142 BUB1B-PAK6H3BSN5 160 aa16.77■□□□□ 0.27
VPS28-209ENST00000528142 SCO1O75880 301 aa16.77■□□□□ 0.27
VPS28-209ENST00000528142 GOSR1O95249 250 aa16.77■□□□□ 0.27
VPS28-209ENST00000528142 MC5RP33032 325 aa16.77■□□□□ 0.27
VPS28-209ENST00000528142 ONECUT1Q9UBC0 465 aa16.77■□□□□ 0.27
VPS28-209ENST00000528142 LOC105371242A0A075B767 164 aa16.76■□□□□ 0.27
VPS28-209ENST00000528142 PRSS46E5RG02 174 aa16.76■□□□□ 0.27
VPS28-209ENST00000528142 SERF2P84101 59 aa16.76■□□□□ 0.27
VPS28-209ENST00000528142 SPSB3Q6PJ21 355 aa16.76■□□□□ 0.27
VPS28-209ENST00000528142 TREM1Q9NP99 234 aa16.76■□□□□ 0.27
VPS28-209ENST00000528142 TIMM9Q9Y5J7 89 aa16.76■□□□□ 0.27
VPS28-209ENST00000528142 TEX50A0A1B0GTY4 177 aa16.75■□□□□ 0.27
VPS28-209ENST00000528142 IGLV2-23P01705 113 aa16.75■□□□□ 0.27
VPS28-209ENST00000528142 ADCYAP1P18509 176 aa16.75■□□□□ 0.27
VPS28-209ENST00000528142 RAB13P51153 203 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms