RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 MAP2K4P45985 399 aa17.62■□□□□ 0.41
CPSF1-202ENST00000527827 RPL27AP46776 148 aaKnown RBP17.62■□□□□ 0.41
CPSF1-202ENST00000527827 KLK9Q2XQG4 91 aa17.62■□□□□ 0.41
CPSF1-202ENST00000527827 PUSL1Q8N0Z8 303 aaKnown RBP17.62■□□□□ 0.41
CPSF1-202ENST00000527827 TMEM167AQ8TBQ9 72 aa17.62■□□□□ 0.41
CPSF1-202ENST00000527827 FYTTD1Q96QD9 318 aaKnown RBP17.62■□□□□ 0.41
CPSF1-202ENST00000527827 OR2A7Q96R45 310 aa17.62■□□□□ 0.41
CPSF1-202ENST00000527827 SLC2A9Q9NRM0 540 aa17.62■□□□□ 0.41
CPSF1-202ENST00000527827 KLK9Q9UKQ9 250 aa17.62■□□□□ 0.41
CPSF1-202ENST00000527827 MRPS7Q9Y2R9 242 aaKnown RBP17.62■□□□□ 0.41
CPSF1-202ENST00000527827 TRAV1-2A0A0B4J238 106 aa17.61■□□□□ 0.41
CPSF1-202ENST00000527827 IGKV1D-13A0A0B4J2D9 117 aa17.61■□□□□ 0.41
CPSF1-202ENST00000527827 PDCD5O14737 125 aa17.61■□□□□ 0.41
CPSF1-202ENST00000527827 CRYGCP07315 174 aa17.61■□□□□ 0.41
CPSF1-202ENST00000527827 ZNF735P0CB33 412 aa17.61■□□□□ 0.41
CPSF1-202ENST00000527827 IGKV1-13P0DP09 117 aa17.61■□□□□ 0.41
CPSF1-202ENST00000527827 AREGP15514 252 aa17.61■□□□□ 0.41
CPSF1-202ENST00000527827 BRWD1-AS2P59051 145 aa17.61■□□□□ 0.41
CPSF1-202ENST00000527827 UXS1Q8NBZ7 420 aa17.61■□□□□ 0.41
CPSF1-202ENST00000527827 OR52B4Q8NGK2 314 aa17.61■□□□□ 0.41
CPSF1-202ENST00000527827 LOC102724200A0A096LPH7 203 aaPredicted RBP17.6■□□□□ 0.41
CPSF1-202ENST00000527827 ZNF320A2RRD8 509 aa17.6■□□□□ 0.41
CPSF1-202ENST00000527827 DPPA5A6NC42 116 aa17.6■□□□□ 0.41
CPSF1-202ENST00000527827 METTL21EPA6NDL7 271 aa17.6■□□□□ 0.41
CPSF1-202ENST00000527827 ERICH4A6NGS2 130 aa17.6■□□□□ 0.41
CPSF1-202ENST00000527827 SCAF4O95104 1147 aaKnown RBP17.6■□□□□ 0.41
CPSF1-202ENST00000527827 CD36P16671 472 aa17.6■□□□□ 0.41
CPSF1-202ENST00000527827 EIF4EBP1Q13541 118 aaPredicted RBP17.6■□□□□ 0.41
CPSF1-202ENST00000527827 SSX1Q16384 188 aa17.6■□□□□ 0.41
CPSF1-202ENST00000527827 FAM106AQ4KMX7 169 aa17.6■□□□□ 0.41
CPSF1-202ENST00000527827 CCDC90BQ9GZT6 254 aa17.6■□□□□ 0.41
CPSF1-202ENST00000527827 FRAS1Q86XX4 4008 aa17.6■□□□□ 0.41
CPSF1-202ENST00000527827 SLC22A5O76082 557 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 LY6G6CO95867 125 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 CTRB1P17538 263 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 PSMB6P28072 239 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 MAS1LP35410 378 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 CTRB2Q6GPI1 263 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 PRSS48Q7RTY5 328 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 OR4S2Q8NH73 311 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 VSTM2AQ8TAG5 236 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 EEF1AKMT3Q96AZ1 226 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 ST6GALNAC5Q9BVH7 336 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 ATG5Q9H1Y0 275 aa17.59■□□□□ 0.41
CPSF1-202ENST00000527827 CTXN2P0C2S0 81 aa17.58■□□□□ 0.4
CPSF1-202ENST00000527827 CRHBPP24387 322 aa17.58■□□□□ 0.4
CPSF1-202ENST00000527827 AQP4P55087 323 aa17.58■□□□□ 0.4
CPSF1-202ENST00000527827 EWSR1Q01844 656 aaKnown RBP eCLIP17.58■□□□□ 0.4
CPSF1-202ENST00000527827 CDNFQ49AH0 187 aa17.58■□□□□ 0.4
CPSF1-202ENST00000527827 TM4SF20Q53R12 229 aa17.58■□□□□ 0.4
CPSF1-202ENST00000527827 BTNL8Q6UX41 500 aa17.58■□□□□ 0.4
CPSF1-202ENST00000527827 NR2C2APQ86WQ0 139 aa17.58■□□□□ 0.4
CPSF1-202ENST00000527827 HSD17B10Q99714 261 aaKnown RBP17.58■□□□□ 0.4
CPSF1-202ENST00000527827 KRTAP17-1Q9BYP8 105 aa17.58■□□□□ 0.4
CPSF1-202ENST00000527827 CGB1A6NKQ9 187 aa17.57■□□□□ 0.4
CPSF1-202ENST00000527827 MYOD1P15172 320 aa17.57■□□□□ 0.4
CPSF1-202ENST00000527827 RAB3BP20337 219 aa17.57■□□□□ 0.4
CPSF1-202ENST00000527827 PMS2P11Q13670 270 aa17.57■□□□□ 0.4
CPSF1-202ENST00000527827 ARL6IP1Q15041 203 aa17.57■□□□□ 0.4
CPSF1-202ENST00000527827 ANKRD55Q3KP44 614 aa17.57■□□□□ 0.4
CPSF1-202ENST00000527827 OR4A47Q6IF82 309 aa17.57■□□□□ 0.4
CPSF1-202ENST00000527827 UNQ9165/PRO28630Q6UXU0 137 aa17.57■□□□□ 0.4
CPSF1-202ENST00000527827 TCTEX1D2Q8WW35 142 aa17.57■□□□□ 0.4
CPSF1-202ENST00000527827 SPATA2Q9UM82 520 aa17.57■□□□□ 0.4
CPSF1-202ENST00000527827 IGLV11-55A0A075B6I3 123 aa17.56■□□□□ 0.4
CPSF1-202ENST00000527827 A0A0J9YWU9 116 aa17.56■□□□□ 0.4
CPSF1-202ENST00000527827 CXorf65A6NEN9 183 aa17.56■□□□□ 0.4
CPSF1-202ENST00000527827 MFSD2BA6NFX1 497 aa17.56■□□□□ 0.4
CPSF1-202ENST00000527827 REG1AP05451 166 aa17.56■□□□□ 0.4
CPSF1-202ENST00000527827 C8orf88P0DMB2 117 aa17.56■□□□□ 0.4
CPSF1-202ENST00000527827 HIST1H1BP16401 226 aaKnown RBP17.56■□□□□ 0.4
CPSF1-202ENST00000527827 HACD4Q5VWC8 232 aa17.56■□□□□ 0.4
CPSF1-202ENST00000527827 WFDC3Q8IUB2 231 aa17.56■□□□□ 0.4
CPSF1-202ENST00000527827 MFSD4AQ8N468 514 aa17.56■□□□□ 0.4
CPSF1-202ENST00000527827 DCSTAMPQ9H295 470 aa17.56■□□□□ 0.4
CPSF1-202ENST00000527827 TRAV25A0A0B4J276 109 aa17.55■□□□□ 0.4
CPSF1-202ENST00000527827 DHFRP00374 187 aa17.55■□□□□ 0.4
CPSF1-202ENST00000527827 MYL9P24844 172 aa17.55■□□□□ 0.4
CPSF1-202ENST00000527827 RPL8P62917 257 aaKnown RBP17.55■□□□□ 0.4
CPSF1-202ENST00000527827 CNIH2Q6PI25 160 aa17.55■□□□□ 0.4
CPSF1-202ENST00000527827 SSX9Q7RTT3 188 aa17.55■□□□□ 0.4
CPSF1-202ENST00000527827 NUDCD2Q8WVJ2 157 aa17.55■□□□□ 0.4
CPSF1-202ENST00000527827 GPHA2Q96T91 129 aa17.55■□□□□ 0.4
CPSF1-202ENST00000527827 TAS2R8Q9NYW2 309 aa17.55■□□□□ 0.4
CPSF1-202ENST00000527827 TRBV7-1A0A0A6YYK4 115 aa17.54■□□□□ 0.4
CPSF1-202ENST00000527827 CLEC3BP05452 202 aa17.54■□□□□ 0.4
CPSF1-202ENST00000527827 TNFRSF9Q07011 255 aa17.54■□□□□ 0.4
CPSF1-202ENST00000527827 NRG4Q8WWG1 115 aa17.54■□□□□ 0.4
CPSF1-202ENST00000527827 KMT2AQ03164 3969 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 TRDV1A0A1B0GX56 115 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 NUPR2A6NF83 97 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 HRASP01112 189 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 TBCEQ15813 527 aaPredicted RBP17.53■□□□□ 0.4
CPSF1-202ENST00000527827 ZNF585BQ52M93 769 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 ZNF66Q6ZN08 573 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 ZNF367Q7RTV3 350 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 LYG2Q86SG7 212 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 OR1L6Q8NGR2 347 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 MARC2Q969Z3 335 aa17.53■□□□□ 0.4
CPSF1-202ENST00000527827 CXorf58Q96LI9 332 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms