RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 SZT2Q5T011 3432 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 A0A087WUU8 490 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 A0A0A6YYH2 397 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 OR6C6A6NF89 314 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 A6NJ64 397 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 CXCR6O00574 342 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 ZNF737O75373 536 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 ATP6V1G2O95670 118 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 KRT75O95678 551 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 LAMA2P24043 3122 aaKnown RBP1.02□□□□□ -2.25
CD44-215ENST00000525241 MAGEA2P43356 314 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 TPM4P67936 248 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 FABP5Q01469 135 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 DNAL1Q4LDG9 190 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 COQ5Q5HYK3 327 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 TMEM42Q69YG0 159 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 DOCK3Q8IZD9 2030 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 TMEM161BQ8NDZ6 487 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 DDI1Q8WTU0 396 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 PACRGQ96M98 296 aaPredicted RBP1.02□□□□□ -2.25
CD44-215ENST00000525241 NMNAT3Q96T66 252 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 DHRS9Q9BPW9 319 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 DCUN1D5Q9BTE7 237 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 TTTY13Q9BZ97 58 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 NSRP1Q9H0G5 558 aaKnown RBP1.02□□□□□ -2.25
CD44-215ENST00000525241 DOCK5Q9H7D0 1870 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 SPANXB1Q9NS25 103 aaPredicted RBP1.02□□□□□ -2.25
CD44-215ENST00000525241 KIF15Q9NS87 1388 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 BRWD1Q9NSI6 2320 aa1.02□□□□□ -2.25
CD44-215ENST00000525241 PCYT1BQ9Y5K3 369 aaPredicted RBP1.02□□□□□ -2.25
CD44-215ENST00000525241 SYNE2Q8WXH0 6885 aaKnown RBP1.01□□□□□ -2.25
CD44-215ENST00000525241 MED1Q15648 1581 aaPredicted RBP1.01□□□□□ -2.25
CD44-215ENST00000525241 SNAPC4Q5SXM2 1469 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 PLB1Q6P1J6 1458 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 ABCC12Q96J65 1359 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 TEX50A0A1B0GTY4 177 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 MT-CO2P00403 227 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 IL6P05231 212 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 TPM3P06753 285 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 UGT2B7P16662 529 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 GPX2P18283 190 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 CCR2P41597 374 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 CDC34P49427 236 aaPredicted RBP1.01□□□□□ -2.25
CD44-215ENST00000525241 TBPL1P62380 186 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 EBPQ15125 230 aaKnown RBP1.01□□□□□ -2.25
CD44-215ENST00000525241 OR1L8Q8NGR8 309 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 ZNF675Q8TD23 568 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 EEF1AKMT1Q8WVE0 214 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 Q96M85 177 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 DERL2Q9GZP9 239 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 NKIRAS1Q9NYS0 192 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 CCDC88CQ9P219 2028 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 MYH11P35749 1972 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 TENM4Q6N022 2769 aa1.01□□□□□ -2.25
CD44-215ENST00000525241 AHNAKQ09666 5890 aaKnown RBP1□□□□□ -2.25
CD44-215ENST00000525241 ADCY9O60503 1353 aa1□□□□□ -2.25
CD44-215ENST00000525241 MYO3BQ8WXR4 1341 aa1□□□□□ -2.25
CD44-215ENST00000525241 TRBV6-5A0A0K0K1A5 114 aa1□□□□□ -2.25
CD44-215ENST00000525241 STX10O60499 249 aa1□□□□□ -2.25
CD44-215ENST00000525241 AHSA1O95433 338 aa1□□□□□ -2.25
CD44-215ENST00000525241 TYMSP04818 313 aa1□□□□□ -2.25
CD44-215ENST00000525241 CCL1P22362 96 aa1□□□□□ -2.25
CD44-215ENST00000525241 SFXN4Q6P4A7 337 aa1□□□□□ -2.25
CD44-215ENST00000525241 CD200R1LQ6Q8B3 271 aa1□□□□□ -2.25
CD44-215ENST00000525241 LYZL1Q6UWQ5 148 aa1□□□□□ -2.25
CD44-215ENST00000525241 OR13C8Q8NGS7 320 aa1□□□□□ -2.25
CD44-215ENST00000525241 CMTM5Q96DZ9 223 aa1□□□□□ -2.25
CD44-215ENST00000525241 ANGPT4Q9Y264 503 aa1□□□□□ -2.25
CD44-215ENST00000525241 RBM7Q9Y580 266 aaKnown RBP1□□□□□ -2.25
CD44-215ENST00000525241 KDM6BO15054 1643 aa1□□□□□ -2.25
CD44-215ENST00000525241 C9orf84Q5VXU9 1444 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 CFAP47Q6ZTR5 3102 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 H0Y980 276 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 KLRC4O43908 158 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 DEXIO95424 95 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 REG1AP05451 166 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 RPL12P30050 165 aaKnown RBP0.99□□□□□ -2.25
CD44-215ENST00000525241 FKBP1AP62942 108 aaKnown RBP0.99□□□□□ -2.25
CD44-215ENST00000525241 HLA-DRB3P79483 266 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 HOXC5Q00444 222 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 NNATQ16517 81 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 MIAQ16674 131 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 SYPL2Q5VXT5 272 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 CST9Q5W186 159 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 LRRN1Q6UXK5 716 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 KTN1-AS1Q86SY8 53 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 GPHB5Q86YW7 130 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 C1orf158Q8N1D5 194 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 OR8J2Q8NGG1 315 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 PTH2Q96A98 100 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 TIPINQ9BVW5 301 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 MAP1LC3AQ9H492 121 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 XPNPEP1Q9NQW7 623 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 NEBP20929 6669 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 SPG11Q96JI7 2443 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 EYSQ5T1H1 3165 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 PLXND1Q9Y4D7 1925 aa0.99□□□□□ -2.25
CD44-215ENST00000525241 VCANP13611 3396 aa0.98□□□□□ -2.25
CD44-215ENST00000525241 IGSF10Q6WRI0 2623 aa0.98□□□□□ -2.25
CD44-215ENST00000525241 TMED7-TICAM2A0A0A6YYA0 188 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms