RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 COMMD1Q8N668 190 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 LFNGQ8NES3 379 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 SCGB3A2Q96PL1 93 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 ZNF430Q9H8G1 570 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 PLEKHA2Q9HB19 425 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 ZNF355PQ9NSJ1 428 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 PTTG2Q9NZH5 202 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 COMMD9Q9P000 198 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 FBXO7Q9Y3I1 522 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 KRASP01116 189 aa8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 G6PCP35575 357 aa8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 RND3P61587 244 aa8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 SURF2Q15527 256 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 TRIM16LQ309B1 348 aa8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 OR4A47Q6IF82 309 aa8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 LCNL1Q6ZST4 164 aa8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 NDUFA11Q86Y39 141 aa8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 TCTEX1D1Q8N7M0 179 aa8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 RNASE11Q8TAA1 199 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 FAM110DQ8TAY7 271 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 WIPF2Q8TF74 440 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 S100ZQ8WXG8 99 aa8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 FYTTD1Q96QD9 318 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 TMEM140Q9NV12 185 aa8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 FOXA2Q9Y261 457 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 TSSC4Q9Y5U2 329 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-210ENST00000509454 C3orf85A0A1B0GTC6 90 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 MSGN1A6NI15 193 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 MARCH11A6NNE9 402 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 CENPXA8MT69 81 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 CD40LGP29965 261 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 CD83Q01151 205 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 FOXE3Q13461 319 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 SP6Q3SY56 376 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 TCTEX1D4Q5JR98 221 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 TMED4Q7Z7H5 227 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 PUSL1Q8N0Z8 303 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 OR5T1Q8NG75 326 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 OR4A5Q8NH83 315 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 TMEM167AQ8TBQ9 72 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 CASTOR1Q8WTX7 329 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 SRSF12Q8WXF0 261 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 MRGPRFQ96AM1 343 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 SLC2A8Q9NY64 477 aa8.96□□□□□ -0.97
LIMCH1-210ENST00000509454 H0Y980 276 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 SNAPC5O75971 98 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 RPLP1P05386 114 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 ELANEP08246 267 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 EGR2P11161 476 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 IL7P13232 177 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 AKR1C4P17516 323 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 RPL27AP46776 148 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 RPL8P62917 257 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 ZNF585BQ52M93 769 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 C10orf55Q5SWW7 151 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 MS4A10Q96PG2 267 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 TP53RKQ96S44 253 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 SDHCQ99643 169 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 RTBDNQ9BSG5 229 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 AKIP1Q9NQ31 210 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 BET1LQ9NYM9 111 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 ZNF580Q9UK33 172 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 GPR132Q9UNW8 380 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 VSIG4Q9Y279 399 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 TRAV3A0A0B4J244 114 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 NAP1L6A6NFF2 107 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 UPK2O00526 184 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 RBMXL2O75526 392 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 TSPAN15O95858 294 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 IGHG4P01861 327 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 HLA-GP17693 338 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 MAS1LP35410 378 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 AKR1C2P52895 323 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 RPL23AP62750 156 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 CFHR3Q02985 330 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 H2BFWTQ7Z2G1 175 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 SGPP2Q8IWX5 399 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 ADAD2Q8NCV1 583 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 KLHL30-AS1Q8NEE0 82 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 OR4F17Q8NGA8 305 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 DEDD2Q8WXF8 326 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 OR4F4Q96R69 305 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 SPIN2AQ99865 258 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 SPIN2BQ9BPZ2 258 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 HINT2Q9BX68 163 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 COMMD5Q9GZQ3 224 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 C5orf66Q9H5L9 145 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 NAA60Q9H7X0 242 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 COA4Q9NYJ1 87 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 NSG2Q9Y328 171 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 NUBP2Q9Y5Y2 271 aa8.95□□□□□ -0.98
LIMCH1-210ENST00000509454 ATG12O94817 140 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 PF4P02776 101 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 OR5AC1P0C628 307 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 MYOD1P15172 320 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 CCR6P51684 374 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 CRIP2P52943 208 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 TPPP2P59282 170 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 OR2B8PP59922 312 aa8.94□□□□□ -0.98
LIMCH1-210ENST00000509454 SSBP2P81877 361 aaPredicted RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms