RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 IQCF2Q8IXL9 164 aa12.15□□□□□ -0.46
PHF3-209ENST00000509330 NCOR1P1Q9H4R4 102 aa12.15□□□□□ -0.46
PHF3-209ENST00000509330 SPG11Q96JI7 2443 aa12.15□□□□□ -0.46
PHF3-209ENST00000509330 UTP20O75691 2785 aaKnown RBP12.15□□□□□ -0.46
PHF3-209ENST00000509330 PMS2P5A8MQ11 134 aa12.15□□□□□ -0.47
PHF3-209ENST00000509330 IFNA4P05014 189 aa12.15□□□□□ -0.47
PHF3-209ENST00000509330 ATF4P18848 351 aaPredicted RBP12.15□□□□□ -0.47
PHF3-209ENST00000509330 MEF2CQ06413 473 aaPredicted RBP12.15□□□□□ -0.47
PHF3-209ENST00000509330 RXFP4Q8TDU9 374 aa12.15□□□□□ -0.47
PHF3-209ENST00000509330 FAM122AQ96E09 287 aa12.15□□□□□ -0.47
PHF3-209ENST00000509330 GNG13Q9P2W3 67 aa12.15□□□□□ -0.47
PHF3-209ENST00000509330 MYO18BQ8IUG5 2567 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 FAM157AC9JC47 383 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 DNASE2O00115 360 aaPredicted RBP12.14□□□□□ -0.47
PHF3-209ENST00000509330 IGKV1D-33P01593 117 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 IGKV1-33P01594 117 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 ZNF726P1Q15940 193 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 SLC25A22Q9H936 323 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 C19orf84I3L1E1 186 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 OR8U8P0C7N1 319 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 ACSM6Q6P461 480 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 HARBI1Q96MB7 349 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 CIB3Q96Q77 187 aaPredicted RBP12.14□□□□□ -0.47
PHF3-209ENST00000509330 CLCC1Q96S66 551 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 SCRT1Q9BWW7 348 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 SEC11CQ9BY50 192 aa12.14□□□□□ -0.47
PHF3-209ENST00000509330 RBFOX2O43251 390 aaKnown RBP eCLIP12.13□□□□□ -0.47
PHF3-209ENST00000509330 SPCS3P61009 180 aa12.13□□□□□ -0.47
PHF3-209ENST00000509330 RTL8BQ17RB0 113 aa12.13□□□□□ -0.47
PHF3-209ENST00000509330 HIPK2Q9H2X6 1198 aa12.13□□□□□ -0.47
PHF3-209ENST00000509330 C15orf61A6NNL5 157 aa12.13□□□□□ -0.47
PHF3-209ENST00000509330 J3QR06 171 aa12.13□□□□□ -0.47
PHF3-209ENST00000509330 ENSAO43768 121 aaKnown RBP12.13□□□□□ -0.47
PHF3-209ENST00000509330 SAA1P0DJI8 122 aaPredicted RBP12.13□□□□□ -0.47
PHF3-209ENST00000509330 PEA15Q15121 130 aa12.13□□□□□ -0.47
PHF3-209ENST00000509330 GCSAMLQ5JQS6 135 aa12.13□□□□□ -0.47
PHF3-209ENST00000509330 TMEM147Q9BVK8 224 aa12.13□□□□□ -0.47
PHF3-209ENST00000509330 LINC00574Q9H8X3 128 aa12.13□□□□□ -0.47
PHF3-209ENST00000509330 UBTD1Q9HAC8 227 aa12.13□□□□□ -0.47
PHF3-209ENST00000509330 A0A1W2PRD5 423 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 A0A1W2PRF3 423 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 A0A1W2PRM7 423 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 IGHV1-8P0DP01 117 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 KIR2DS2P43631 304 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 TLE4Q04727 773 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 TMEM155Q4W5P6 130 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 TMEM170AQ8WVE7 144 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 RCC1LQ96I51 464 aaKnown RBP12.12□□□□□ -0.47
PHF3-209ENST00000509330 OR51B2Q9Y5P1 312 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 CRYBG3Q68DQ2 2970 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 RBFOX3A6NFN3 312 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 M0R036 132 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.12□□□□□ -0.47
PHF3-209ENST00000509330 TMPRSS5Q9H3S3 457 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 ONECUT1Q9UBC0 465 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 ITGB1BP1O14713 200 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 SNRNP70P08621 437 aaKnown RBP12.12□□□□□ -0.47
PHF3-209ENST00000509330 APELAP0DMC3 54 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 C10orf55Q5SWW7 151 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 ZNF787Q6DD87 383 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 OR10W1Q8NGF6 305 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 PINX1Q96BK5 328 aaKnown RBP12.12□□□□□ -0.47
PHF3-209ENST00000509330 RITA1Q96K30 269 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 PBDC1Q9BVG4 233 aa12.12□□□□□ -0.47
PHF3-209ENST00000509330 CARHSP1Q9Y2V2 147 aaKnown RBP12.12□□□□□ -0.47
PHF3-209ENST00000509330 CSMD2Q7Z408 3487 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 VDAC2P45880 294 aaPredicted RBP12.11□□□□□ -0.47
PHF3-209ENST00000509330 FFAR4Q5NUL3 377 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 C11orf42Q8N5U0 333 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 SIRT7Q9NRC8 400 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 PUS1Q9Y606 427 aaKnown RBP eCLIP12.11□□□□□ -0.47
PHF3-209ENST00000509330 NAV3Q8IVL0 2385 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 H0YJW9 148 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 HRASP01112 189 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 FAM122CQ6P4D5 195 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 ZNF833PQ6ZTB9 187 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 MOB3BQ86TA1 216 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 RPP25LQ8N5L8 163 aaKnown RBP12.11□□□□□ -0.47
PHF3-209ENST00000509330 ADTRPQ96IZ2 230 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 NPCDR1Q9BY65 106 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 RAB1BQ9H0U4 201 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 ENY2Q9NPA8 101 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 KAAG1Q9UBP8 84 aa12.11□□□□□ -0.47
PHF3-209ENST00000509330 USP9XQ93008 2570 aaPredicted RBP12.1□□□□□ -0.47
PHF3-209ENST00000509330 PPIAL4CA0A0B4J2A2 164 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 SNAPINO95295 136 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 IGHV2-70P01814 119 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 APOA2P02652 100 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 PPIAL4GP0DN37 164 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 DLX6P56179 175 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 ZNF841Q6ZN19 808 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 TMEM204Q9BSN7 226 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 USP24Q9UPU5 2620 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 CD1BP29016 333 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 TGIF2LXQ8IUE1 241 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 SSMEM1Q8WWF3 244 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 TPSG1Q9NRR2 321 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 CBLN4Q9NTU7 201 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 GAB2Q9UQC2 676 aa12.1□□□□□ -0.47
PHF3-209ENST00000509330 E7EUB6 86 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 179 ms