RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 C10orf67Q8IYJ2 551 aa1.47□□□□□ -2.17
HMGB1P28-201ENST00000507778 TBC1D19Q8N5T2 526 aa1.47□□□□□ -2.17
HMGB1P28-201ENST00000507778 ASB17Q8WXJ9 295 aa1.47□□□□□ -2.17
HMGB1P28-201ENST00000507778 NOSIPQ9Y314 301 aaKnown RBP1.47□□□□□ -2.17
HMGB1P28-201ENST00000507778 FBN1P35555 2871 aaKnown RBP1.47□□□□□ -2.17
HMGB1P28-201ENST00000507778 CHD2O14647 1828 aaKnown RBP1.47□□□□□ -2.17
HMGB1P28-201ENST00000507778 STRCP1A6NGW2 1772 aa1.47□□□□□ -2.17
HMGB1P28-201ENST00000507778 BAHCC1Q9P281 2608 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 TRAV7A0A075B6U4 112 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 EVPLLA8MZ36 301 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 H3BT86 120 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 PGLYRP1O75594 196 aaPredicted RBP1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 LGALS1P09382 135 aaKnown RBP1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 ALDH3A1P30838 453 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 MARCKSL1P49006 195 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 RAB13P51153 203 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 TNFAIP8L3Q5GJ75 292 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 COQ5Q5HYK3 327 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 TMEM42Q69YG0 159 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 SSX8Q7RTT4 187 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 IQCF2Q8IXL9 164 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 C10orf126Q8N4M7 172 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 DEFB125Q8N687 156 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 GPR32P1Q8NGA4 272 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 SLC7A6Q92536 515 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 PTH2Q96A98 100 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 OPTNQ96CV9 577 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 DOHHQ9BU89 302 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 MRPS26Q9BYN8 205 aaKnown RBP1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 FAM96AQ9H5X1 160 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 DOK5Q9P104 306 aa1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 AMMECR1Q9Y4X0 333 aaPredicted RBP1.46□□□□□ -2.18
HMGB1P28-201ENST00000507778 ITGB4P16144 1822 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 DSCAML1Q8TD84 2053 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 ATG2BQ96BY7 2078 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 NSA2O95478 260 aaKnown RBP1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 CALB1P05937 261 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 RPL28P46779 137 aaKnown RBP1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 CSN1S1P47710 185 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 TCL1AP56279 114 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 RAB14P61106 215 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 HIST1H4AP62805 103 aaKnown RBP1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 CAV1Q03135 178 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 Q6ZRN7 208 aaPredicted RBP1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 COA5Q86WW8 74 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 ROPN1LQ96C74 230 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 SPZ1Q9BXG8 430 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 VCX3BQ9H321 246 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 OR51I1Q9H343 314 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 XPNPEP1Q9NQW7 623 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 C8orf4Q9NR00 106 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 ANGPT4Q9Y264 503 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 RGS12O14924 1447 aa1.45□□□□□ -2.18
HMGB1P28-201ENST00000507778 PLXNA3P51805 1871 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 TRAV38-1A0A0B4J264 116 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 IGHV1-18A0A0C4DH31 117 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 HMSDA8MTL9 139 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 A8MUN3 132 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 H7C2G1 150 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 I3L521 148 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 TGOLN2O43493 480 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 DCTN3O75935 186 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 C1QCP02747 245 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 PRB1P04280 392 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 SERPINA7P05543 415 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 TFPTP0C1Z6 253 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 FAM228BP0C875 321 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 OR4D2P58180 307 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 RAB5BP61020 215 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 POLR2GP62487 172 aaKnown RBP eCLIP1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 C9orf64Q5T6V5 341 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 LPCAT4Q643R3 524 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 ZNF563Q8TA94 476 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 ARL5BQ96KC2 179 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 NAT8Q9UHE5 227 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 LSM5Q9Y4Y9 91 aaKnown RBP1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 SORL1Q92673 2214 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 FLT4P35916 1363 aa1.44□□□□□ -2.18
HMGB1P28-201ENST00000507778 ARHGAP32A7KAX9 2087 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 MPDZO75970 2070 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 TRGV2A0A075B6R0 118 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 A0A1B0GV50 99 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 NIPSNAP2O75323 286 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 NAPSAO96009 420 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 MSMBP08118 114 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 SRP19P09132 144 aaKnown RBP1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 CCL5P13501 91 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 KCNE1P15382 129 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 MSNP26038 577 aaKnown RBP1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 S100A7P31151 101 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 KRTAP21-3Q3LHN1 58 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 TMEM155Q4W5P6 130 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 ACSM3Q53FZ2 586 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 FAM201AQ5SY85 155 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 SFXN4Q6P4A7 337 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 DYNAPQ8N1N2 210 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 ANKRD7Q92527 254 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 CNBD2Q96M20 576 aa1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 PAQR5Q9NXK6 330 aaPredicted RBP1.43□□□□□ -2.18
HMGB1P28-201ENST00000507778 RSL24D1Q9UHA3 163 aaKnown RBP1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms