RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 METTL21EPA6NDL7 271 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 CREBL2O60519 120 aaPredicted RBP9.5□□□□□ -0.89
SKA1-205ENST00000494518 GGCTO75223 188 aaKnown RBP9.5□□□□□ -0.89
SKA1-205ENST00000494518 NDUFB8O95169 186 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 DIRAS3O95661 229 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 REG1AP05451 166 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 IL6RP08887 468 aaPredicted RBP9.5□□□□□ -0.89
SKA1-205ENST00000494518 RAB3BP20337 219 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 RAB6AP20340 208 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 CRHBPP24387 322 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 KIR2DS2P43631 304 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 RPL27AP46776 148 aaKnown RBP9.5□□□□□ -0.89
SKA1-205ENST00000494518 CDNFQ49AH0 187 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 CLEC19AQ6UXS0 136 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 SSX9Q7RTT3 188 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 PRSS48Q7RTY5 328 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 NR2C2APQ86WQ0 139 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 LAX1Q8IWV1 398 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 NUDCD2Q8WVJ2 157 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 TCTEX1D2Q8WW35 142 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 CCDC140Q96MF4 163 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 TAS2R8Q9NYW2 309 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 SPATA2Q9UM82 520 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 ZNF257Q9Y2Q1 563 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 MRPS7Q9Y2R9 242 aaKnown RBP9.5□□□□□ -0.89
SKA1-205ENST00000494518 RBMX2Q9Y388 322 aaKnown RBP9.5□□□□□ -0.89
SKA1-205ENST00000494518 PRELID3BQ9Y3B1 194 aa9.5□□□□□ -0.89
SKA1-205ENST00000494518 KMT2AQ03164 3969 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 TRAV1-2A0A0B4J238 106 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 ZNF320A2RRD8 509 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 TMEM235A6NFC5 223 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 SCAF4O95104 1147 aaKnown RBP9.49□□□□□ -0.89
SKA1-205ENST00000494518 IGLV2-14P01704 120 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 AREGP15514 252 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 ARL3P36405 182 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 RANBP1P43487 201 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 C22orf42Q6IC83 251 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 Q6ZS49 121 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 SLC25A42Q86VD7 318 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 TMEM61Q8N0U2 210 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 IL17DQ8TAD2 202 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 OR51E2Q9H255 320 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 OR2W1Q9Y3N9 320 aa9.49□□□□□ -0.89
SKA1-205ENST00000494518 TMEM213A2RRL7 107 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 MFSD2BA6NFX1 497 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 TNFSF12O43508 249 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 KBTBD11O94819 623 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 HLA-DQB1P01920 261 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 CD36P16671 472 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 CBLN1P23435 193 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 DTYMKP23919 212 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 PMS2P11Q13670 270 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 ZNF57Q68EA5 555 aaPredicted RBP9.48□□□□□ -0.89
SKA1-205ENST00000494518 ZNF367Q7RTV3 350 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 OR4S2Q8NH73 311 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 FANCD2OSQ96PS1 177 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 OR2A7Q96R45 310 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 TECRQ9NZ01 308 aaKnown RBP9.48□□□□□ -0.89
SKA1-205ENST00000494518 MLXQ9UH92 298 aa9.48□□□□□ -0.89
SKA1-205ENST00000494518 IGHV3-35A0A0C4DH35 117 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 NPIPB5A8MRT5 1133 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 LGALS9O00182 355 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 PTHLHP12272 177 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 BRWD1-AS2P59051 145 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 TBCEQ15813 527 aaPredicted RBP9.47□□□□□ -0.89
SKA1-205ENST00000494518 TM4SF20Q53R12 229 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 HACD4Q5VWC8 232 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 BTNL8Q6UX41 500 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 SLC16A13Q7RTY0 426 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 PUSL1Q8N0Z8 303 aaKnown RBP9.47□□□□□ -0.89
SKA1-205ENST00000494518 UXS1Q8NBZ7 420 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 OR52B4Q8NGK2 314 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 CNBD2Q96M20 576 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 NDUFB11Q9NX14 153 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 DNAH10Q8IVF4 4471 aa9.47□□□□□ -0.89
SKA1-205ENST00000494518 TRDV1A0A1B0GX56 115 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 SSX5O60225 188 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 FCER2P06734 321 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 ZNF735P0CB33 412 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 PSMB6P28072 239 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 GNG2P59768 71 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 EIF4EBP1Q13541 118 aaPredicted RBP9.46□□□□□ -0.9
SKA1-205ENST00000494518 UNQ9165/PRO28630Q6UXU0 137 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 GPHB5Q86YW7 130 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 MFSD4AQ8N468 514 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 TMEM167AQ8TBQ9 72 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 EEF1AKMT3Q96AZ1 226 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 HSD17B10Q99714 261 aaKnown RBP9.46□□□□□ -0.9
SKA1-205ENST00000494518 GGTLC1Q9BX51 225 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 SLC2A9Q9NRM0 540 aa9.46□□□□□ -0.9
SKA1-205ENST00000494518 CGB1A6NKQ9 187 aa9.45□□□□□ -0.9
SKA1-205ENST00000494518 CTXN2P0C2S0 81 aa9.45□□□□□ -0.9
SKA1-205ENST00000494518 DEFA4P12838 97 aa9.45□□□□□ -0.9
SKA1-205ENST00000494518 CTRB1P17538 263 aa9.45□□□□□ -0.9
SKA1-205ENST00000494518 GPR183P32249 361 aa9.45□□□□□ -0.9
SKA1-205ENST00000494518 RPL8P62917 257 aaKnown RBP9.45□□□□□ -0.9
SKA1-205ENST00000494518 FAM106AQ4KMX7 169 aa9.45□□□□□ -0.9
SKA1-205ENST00000494518 FAM209BQ5JX69 171 aa9.45□□□□□ -0.9
SKA1-205ENST00000494518 CTRB2Q6GPI1 263 aa9.45□□□□□ -0.9
SKA1-205ENST00000494518 CNIH2Q6PI25 160 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms