RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 OR4A47Q6IF82 309 aa11.31□□□□□ -0.6
MCF2L-228ENST00000487354 TMEM91Q6ZNR0 172 aa11.31□□□□□ -0.6
MCF2L-228ENST00000487354 PUSL1Q8N0Z8 303 aaKnown RBP11.31□□□□□ -0.6
MCF2L-228ENST00000487354 KIR2DL5AQ8N109 375 aa11.31□□□□□ -0.6
MCF2L-228ENST00000487354 KIR2DL5BQ8NHK3 375 aa11.31□□□□□ -0.6
MCF2L-228ENST00000487354 CYGBQ8WWM9 190 aa11.31□□□□□ -0.6
MCF2L-228ENST00000487354 SLC2A9Q9NRM0 540 aa11.31□□□□□ -0.6
MCF2L-228ENST00000487354 PLCXD1Q9NUJ7 323 aa11.31□□□□□ -0.6
MCF2L-228ENST00000487354 MFNGO00587 321 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 CREBL2O60519 120 aaPredicted RBP11.3□□□□□ -0.6
MCF2L-228ENST00000487354 FCGR3BO75015 233 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 ACTL6BO94805 426 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 KBTBD11O94819 623 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 MYOD1P15172 320 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 PSMB6P28072 239 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 NANOS2P60321 138 aaKnown RBP11.3□□□□□ -0.6
MCF2L-228ENST00000487354 EIF4EBP1Q13541 118 aaPredicted RBP11.3□□□□□ -0.6
MCF2L-228ENST00000487354 ZNF585BQ52M93 769 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 OR2B11Q5JQS5 317 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 OR56B1Q8NGI3 324 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 MARC2Q969Z3 335 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 EEF1AKMT3Q96AZ1 226 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 SPAG8Q99932 426 aaPredicted RBP11.3□□□□□ -0.6
MCF2L-228ENST00000487354 C5orf66Q9H5L9 145 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 PLGRKTQ9HBL7 147 aa11.3□□□□□ -0.6
MCF2L-228ENST00000487354 AK6Q9Y3D8 172 aaKnown RBP11.3□□□□□ -0.6
MCF2L-228ENST00000487354 TMEM272A0A1B0GTI8 110 aa11.29□□□□□ -0.6
MCF2L-228ENST00000487354 TSPAN4O14817 238 aa11.29□□□□□ -0.6
MCF2L-228ENST00000487354 RPL35AP18077 110 aaKnown RBP11.29□□□□□ -0.6
MCF2L-228ENST00000487354 GALP22466 123 aa11.29□□□□□ -0.6
MCF2L-228ENST00000487354 RPL27AP46776 148 aaKnown RBP11.29□□□□□ -0.6
MCF2L-228ENST00000487354 RAB11BQ15907 218 aa11.29□□□□□ -0.6
MCF2L-228ENST00000487354 RBPMS2Q6ZRY4 209 aaKnown RBP11.29□□□□□ -0.6
MCF2L-228ENST00000487354 TMEM217Q8N7C4 229 aa11.29□□□□□ -0.6
MCF2L-228ENST00000487354 TMEM167AQ8TBQ9 72 aa11.29□□□□□ -0.6
MCF2L-228ENST00000487354 ZNF502Q8TBZ5 544 aa11.29□□□□□ -0.6
MCF2L-228ENST00000487354 FAM3DQ96BQ1 224 aa11.29□□□□□ -0.6
MCF2L-228ENST00000487354 ZNF436Q9C0F3 470 aaPredicted RBP11.29□□□□□ -0.6
MCF2L-228ENST00000487354 OR51E2Q9H255 320 aa11.29□□□□□ -0.6
MCF2L-228ENST00000487354 MAP6D1Q9H9H5 199 aa11.29□□□□□ -0.6
MCF2L-228ENST00000487354 MRPL27Q9P0M9 148 aaKnown RBP11.29□□□□□ -0.6
MCF2L-228ENST00000487354 IGHV3-35A0A0C4DH35 117 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 REG1AP05451 166 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 CLEC3BP05452 202 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 MAP2K4P45985 399 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 ELLP55199 621 aaPredicted RBP11.28□□□□□ -0.6
MCF2L-228ENST00000487354 ARFRP1Q13795 201 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 C2orf76Q3KRA6 126 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 Q6ZS49 121 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 KCTD9Q7L273 389 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 ZNF645Q8N7E2 425 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 STPG3Q8N7X2 389 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 TMEM190Q8WZ59 177 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 ZNF414Q96IQ9 312 aa11.28□□□□□ -0.6
MCF2L-228ENST00000487354 RBM7Q9Y580 266 aaKnown RBP11.28□□□□□ -0.6
MCF2L-228ENST00000487354 IGKV1D-13A0A0B4J2D9 117 aa11.27□□□□□ -0.61
MCF2L-228ENST00000487354 RAB27BO00194 218 aa11.27□□□□□ -0.61
MCF2L-228ENST00000487354 DENRO43583 198 aaKnown RBP11.27□□□□□ -0.61
MCF2L-228ENST00000487354 IGKV1-13P0DP09 117 aa11.27□□□□□ -0.61
MCF2L-228ENST00000487354 GNB3P16520 340 aa11.27□□□□□ -0.61
MCF2L-228ENST00000487354 GPR183P32249 361 aa11.27□□□□□ -0.61
MCF2L-228ENST00000487354 ZNF124Q15973 351 aa11.27□□□□□ -0.61
MCF2L-228ENST00000487354 TMEM203Q969S6 136 aa11.27□□□□□ -0.61
MCF2L-228ENST00000487354 RAB3CQ96E17 227 aa11.27□□□□□ -0.61
MCF2L-228ENST00000487354 OR2A7Q96R45 310 aa11.27□□□□□ -0.61
MCF2L-228ENST00000487354 GINS4Q9BRT9 223 aa11.27□□□□□ -0.61
MCF2L-228ENST00000487354 MND1Q9BWT6 205 aa11.27□□□□□ -0.61
MCF2L-228ENST00000487354 C11orf68Q9H3H3 251 aaKnown RBP11.27□□□□□ -0.61
MCF2L-228ENST00000487354 ELF5Q9UKW6 265 aaPredicted RBP11.27□□□□□ -0.61
MCF2L-228ENST00000487354 RBMX2Q9Y388 322 aaKnown RBP11.27□□□□□ -0.61
MCF2L-228ENST00000487354 TRBV7-1A0A0A6YYK4 115 aa11.26□□□□□ -0.61
MCF2L-228ENST00000487354 RPS25P62851 125 aaKnown RBP11.26□□□□□ -0.61
MCF2L-228ENST00000487354 LIPKQ5VXJ0 399 aa11.26□□□□□ -0.61
MCF2L-228ENST00000487354 SLC38A6Q8IZM9 456 aa11.26□□□□□ -0.61
MCF2L-228ENST00000487354 BPIFB6Q8NFQ5 453 aa11.26□□□□□ -0.61
MCF2L-228ENST00000487354 DCUN1D5Q9BTE7 237 aa11.26□□□□□ -0.61
MCF2L-228ENST00000487354 APLNQ9ULZ1 77 aa11.26□□□□□ -0.61
MCF2L-228ENST00000487354 DPPA5A6NC42 116 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 J3QRK9 145 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 HLA-DQB1P01920 261 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 HIST1H1BP16401 226 aaKnown RBP11.25□□□□□ -0.61
MCF2L-228ENST00000487354 HIST1H1DP16402 221 aaKnown RBP11.25□□□□□ -0.61
MCF2L-228ENST00000487354 MAS1LP35410 378 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 IRF3Q14653 427 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 SPHARQ15513 63 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 DHRSXQ8N5I4 330 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 OR10R2Q8NGX6 335 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 GALNT14Q96FL9 552 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 FBXL17Q9UF56 701 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 UFC1Q9Y3C8 167 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 HSPG2P98160 4391 aa11.25□□□□□ -0.61
MCF2L-228ENST00000487354 IGLC7A0M8Q6 106 aa11.24□□□□□ -0.61
MCF2L-228ENST00000487354 RBMS2Q15434 407 aaKnown RBP11.24□□□□□ -0.61
MCF2L-228ENST00000487354 HES5Q5TA89 166 aa11.24□□□□□ -0.61
MCF2L-228ENST00000487354 APRG1Q8IVJ8 170 aa11.24□□□□□ -0.61
MCF2L-228ENST00000487354 C8orf59Q8N0T1 100 aaPredicted RBP11.24□□□□□ -0.61
MCF2L-228ENST00000487354 OR5B3Q8NH48 314 aa11.24□□□□□ -0.61
MCF2L-228ENST00000487354 OR4S2Q8NH73 311 aa11.24□□□□□ -0.61
MCF2L-228ENST00000487354 VSTM2AQ8TAG5 236 aa11.24□□□□□ -0.61
MCF2L-228ENST00000487354 C11orf45Q8TAV5 145 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms