RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PDLIM3Q53GG5 364 aaPredicted RBP11.5□□□□□ -0.57
CUX1-209ENST00000487284 FAM74A1Q5RGS3 127 aa11.5□□□□□ -0.57
CUX1-209ENST00000487284 OR4A47Q6IF82 309 aa11.5□□□□□ -0.57
CUX1-209ENST00000487284 VKORC1L1Q8N0U8 176 aa11.5□□□□□ -0.57
CUX1-209ENST00000487284 KIR3DL3Q8N743 410 aa11.5□□□□□ -0.57
CUX1-209ENST00000487284 OR13D1Q8NGV5 346 aa11.5□□□□□ -0.57
CUX1-209ENST00000487284 PSENENQ9NZ42 101 aa11.5□□□□□ -0.57
CUX1-209ENST00000487284 CELSR1Q9NYQ6 3014 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 BORCS7-ASMTA0A0B4J1R7 106 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 H3BP45 60 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 IGKV1-16P04430 117 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 IL6RP08887 468 aaPredicted RBP11.49□□□□□ -0.57
CUX1-209ENST00000487284 REG1BP48304 166 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 SULT1A1P50225 295 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 DLX1P56177 255 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 OR2B8PP59922 312 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 DIAPH2-AS1Q14236 149 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 TMEM177Q53S58 311 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 C1orf122Q6ZSJ8 110 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 ZNF429Q86V71 674 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 STX12Q86Y82 276 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 TGIF2LXQ8IUE1 241 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 CIARTQ8N365 385 aaPredicted RBP11.49□□□□□ -0.57
CUX1-209ENST00000487284 STPG2Q8N412 459 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 OR52E5Q8NH55 327 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 OSR1Q8TAX0 266 aaPredicted RBP11.49□□□□□ -0.57
CUX1-209ENST00000487284 TMED6Q8WW62 240 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 C1orf159Q96HA4 380 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 AIFM2Q9BRQ8 373 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 QTRT1Q9BXR0 403 aaKnown RBP11.49□□□□□ -0.57
CUX1-209ENST00000487284 CACFD1Q9UGQ2 172 aa11.49□□□□□ -0.57
CUX1-209ENST00000487284 TRAV3A0A0B4J244 114 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 C15orf61A6NNL5 157 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 B4DSR2 109 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 RBMXL2O75526 392 aaKnown RBP11.48□□□□□ -0.57
CUX1-209ENST00000487284 CST7O76096 145 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 MSMBP08118 114 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 DYNLT3P51808 116 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 PRB3Q04118 309 aaPredicted RBP11.48□□□□□ -0.57
CUX1-209ENST00000487284 TMEM249Q2WGJ8 235 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 EIF5AL1Q6IS14 154 aaKnown RBP11.48□□□□□ -0.57
CUX1-209ENST00000487284 PDPNQ86YL7 162 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 PDZD9Q8IXQ8 264 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 OR5C1Q8NGR4 320 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 OR4A16Q8NH70 328 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 DTD1Q8TEA8 209 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 CIB3Q96Q77 187 aaPredicted RBP11.48□□□□□ -0.57
CUX1-209ENST00000487284 GINS3Q9BRX5 216 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 MED9Q9NWA0 146 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 AMMECR1Q9Y4X0 333 aaPredicted RBP11.48□□□□□ -0.57
CUX1-209ENST00000487284 TNCP24821 2201 aa11.48□□□□□ -0.57
CUX1-209ENST00000487284 BUB1B-PAK6H3BSN5 160 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 FGF16O43320 207 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 LY86O95711 162 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 PRTN3P24158 256 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 COX7A1P24310 79 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 DVL1P1P54792 670 aaPredicted RBP11.47□□□□□ -0.57
CUX1-209ENST00000487284 SPCS3P61009 180 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 TMEM267Q0VDI3 215 aaPredicted RBP11.47□□□□□ -0.57
CUX1-209ENST00000487284 ZNF266Q14584 549 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 TMEM14EPQ6UXP3 125 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 LINC01356Q8N9X3 169 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 OR11H6Q8NGC7 330 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 OR4P4Q8NGL7 312 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 OR1S2Q8NGQ3 325 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 LRRC20Q8TCA0 184 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 ZDHHC16Q969W1 377 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 UNKLQ9H9P5 680 aaKnown RBP11.47□□□□□ -0.57
CUX1-209ENST00000487284 SIRT7Q9NRC8 400 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 FOXA2Q9Y261 457 aaPredicted RBP11.47□□□□□ -0.57
CUX1-209ENST00000487284 WASHC3Q9Y3C0 194 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 INSIG2Q9Y5U4 225 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 ABCA1O95477 2261 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 ACANP16112 2415 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 MAST4O15021 2626 aa11.47□□□□□ -0.57
CUX1-209ENST00000487284 H7C2Y5 167 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 IGHV4-31P0DP07 118 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 S100A1P23297 94 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 MC5RP33032 325 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 RAB13P51153 203 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 CLINT1Q14677 625 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 HAPLN4Q86UW8 402 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 PNKDQ8N490 385 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 SIRPDQ9H106 197 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 TMEM14BQ9NUH8 114 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 BET1LQ9NYM9 111 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 KPTNQ9Y664 436 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 TLN2Q9Y4G6 2542 aa11.46□□□□□ -0.57
CUX1-209ENST00000487284 SRRM4A7MD48 611 aaKnown RBP11.45□□□□□ -0.58
CUX1-209ENST00000487284 CEBPZOSA8MTT3 80 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 LEUTXA8MZ59 168 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 LY6LH3BQJ8 138 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 UPK2O00526 184 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 SMAD7O15105 426 aaKnown RBP11.45□□□□□ -0.58
CUX1-209ENST00000487284 SHOXO15266 292 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 ARG1P05089 322 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 SEC11BP0C7V7 166 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 METTL15P1P0C7V9 234 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 FAM157CP0CG43 387 aa11.45□□□□□ -0.58
CUX1-209ENST00000487284 SPANXN5Q5MJ07 72 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms