RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, human

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM53-208	ENST00000476724	RAB24	Q969Q5	203 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	KBTBD11	O94819	623 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	IFNA10	P01566	189 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	IGHV1-46	P01743	117 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	CD40	P25942	277 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	VDAC2	P45880	294 aa	Predicted RBP	13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	THBS3	P49746	956 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	KIAA0141	Q14154	515 aa	Predicted RBP	13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	TMEM241	Q24JQ0	296 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	ZNF674	Q2M3X9	581 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	STUM	Q69YW2	141 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	C1orf87	Q8N0U7	546 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	NUP37	Q8NFH4	326 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	RND1	Q92730	232 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	RAB1C	Q92928	201 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	PLPPR2	Q96GM1	343 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	VKORC1	Q9BQB6	163 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	HEYL	Q9NQ87	328 aa	Predicted RBP	13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	ELOVL5	Q9NYP7	299 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	URGCP-MRPS24	S4R325	110 aa		13.57	□□□□□ -0.24
TMEM53-208	ENST00000476724	SMCO3	A2RU48	225 aa		13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	SEC14L6	B5MCN3	397 aa		13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	C16orf97	H3BN30	126 aa		13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	ATXN7	O15265	892 aa	Predicted RBP	13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	OPN1MW	P04001	364 aa		13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	OPN1MW2	P0DN77	364 aa		13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	OPN1MW3	P0DN78	364 aa		13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	CDC34	P49427	236 aa	Predicted RBP	13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	HNF4G	Q14541	408 aa		13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	SSX9	Q7RTT3	188 aa		13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	SMIM7	Q9BQ49	75 aa		13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	TMEM140	Q9NV12	185 aa		13.56	□□□□□ -0.24
TMEM53-208	ENST00000476724	TGIF2-C20orf24	A0A0A6YYL0	155 aa		13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	ZNF729	A6NN14	1252 aa	Predicted RBP	13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	CT45A1	Q5HYN5	189 aa		13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	CT45A3	Q8NHU0	189 aa		13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	CORO2A	Q92828	525 aa		13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	LINC00574	Q9H8X3	128 aa		13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	POLE	Q07864	2286 aa		13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	RPS16	P62249	146 aa	Known RBP	13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	TLE1	Q04724	770 aa		13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	TMPRSS5	Q9H3S3	457 aa		13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	DSCAM	O60469	2012 aa		13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	DSCAML1	Q8TD84	2053 aa		13.55	□□□□□ -0.24
TMEM53-208	ENST00000476724	TRBV24-1	A0A075B6N3	115 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	THBD	P07204	575 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	IRF2	P14316	349 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	HOXA5	P20719	270 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	OPRK1	P41145	380 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	CA7	P43166	264 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	TMEM108	Q6UXF1	575 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	ZNF788	Q6ZQV5	615 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	WFDC8	Q8IUA0	241 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724		Q8N7P7	452 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	ST6GALNAC3	Q8NDV1	305 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	FAM210B	Q96KR6	192 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	GAFA1	Q96PS6	74 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	TANC2	Q9HCD6	1990 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	SLC31A2	O15432	143 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	FAM201A	Q5SY85	155 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	TEX36	Q5VZQ5	186 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	SSX8	Q7RTT4	187 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	KCNIP2	Q9NS61	270 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	IDI2-AS1	Q9NZ38	188 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	TCF19	Q9Y242	345 aa		13.54	□□□□□ -0.24
TMEM53-208	ENST00000476724	SMG1	Q96Q15	3661 aa	Known RBP	13.53	□□□□□ -0.24
TMEM53-208	ENST00000476724	SAA2-SAA4	A0A096LPE2	208 aa		13.53	□□□□□ -0.24
TMEM53-208	ENST00000476724	C15orf61	A6NNL5	157 aa		13.53	□□□□□ -0.24
TMEM53-208	ENST00000476724	HMGB3	O15347	200 aa	Known RBP	13.53	□□□□□ -0.24
TMEM53-208	ENST00000476724	SAA2	P0DJI9	122 aa	Predicted RBP	13.53	□□□□□ -0.24
TMEM53-208	ENST00000476724	MRPS11	P82912	194 aa	Known RBP	13.53	□□□□□ -0.24
TMEM53-208	ENST00000476724	POU2AF1	Q16633	256 aa		13.53	□□□□□ -0.24
TMEM53-208	ENST00000476724	ZNF439	Q8NDP4	499 aa		13.53	□□□□□ -0.24
TMEM53-208	ENST00000476724	OR4F5	Q8NH21	305 aa		13.53	□□□□□ -0.24
TMEM53-208	ENST00000476724	OR4F4	Q96R69	305 aa		13.53	□□□□□ -0.24
TMEM53-208	ENST00000476724	FOXA2	Q9Y261	457 aa	Predicted RBP	13.53	□□□□□ -0.24
TMEM53-208	ENST00000476724		A0A1W2PPV4	95 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	PRSS46	E5RG02	174 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	HRAS	P01112	189 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	IGHV3-7	P01780	117 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	SELL	P14151	372 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	TNFRSF1A	P19438	455 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	HSPE1	P61604	102 aa	Known RBP	13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	BSX	Q3C1V8	233 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	TREML4	Q6UXN2	200 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	VKORC1L1	Q8N0U8	176 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	NEIL1	Q96FI4	390 aa	Predicted RBP	13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	RHOV	Q96L33	236 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	PARL	Q9H300	379 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	NBEA	Q8NFP9	2946 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	ITPR1	Q14643	2758 aa		13.52	□□□□□ -0.24
TMEM53-208	ENST00000476724	COL6A6	A6NMZ7	2263 aa		13.52	□□□□□ -0.25
TMEM53-208	ENST00000476724	ICE1	Q9Y2F5	2266 aa		13.52	□□□□□ -0.25
TMEM53-208	ENST00000476724	RRH	O14718	337 aa		13.52	□□□□□ -0.25
TMEM53-208	ENST00000476724	VENTX	O95231	258 aa		13.52	□□□□□ -0.25
TMEM53-208	ENST00000476724	CDX1	P47902	265 aa	Predicted RBP	13.52	□□□□□ -0.25
TMEM53-208	ENST00000476724	ADIRF	Q15847	76 aa		13.52	□□□□□ -0.25
TMEM53-208	ENST00000476724	C1orf229	Q6ZS94	237 aa	Predicted RBP	13.52	□□□□□ -0.25
TMEM53-208	ENST00000476724	TXNDC17	Q9BRA2	123 aa		13.52	□□□□□ -0.25
TMEM53-208	ENST00000476724	NPVF	Q9HCQ7	196 aa		13.52	□□□□□ -0.25

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