RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TAS2R8Q9NYW2 309 aa10.76□□□□□ -0.69
UPF3A-204ENST00000475218 DMRT1Q9Y5R6 373 aa10.76□□□□□ -0.69
UPF3A-204ENST00000475218 A0A0A6YYH2 397 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 A6NJ64 397 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 GABARAPO95166 117 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 IL6RP08887 468 aaPredicted RBP10.75□□□□□ -0.69
UPF3A-204ENST00000475218 ZP3P21754 424 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 FCGR2CP31995 323 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 SYNJ2BPP57105 145 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 OXA1LQ15070 435 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 USMG5Q96IX5 58 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 OR4C12Q96R67 309 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 PHB2Q99623 299 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 HSD17B10Q99714 261 aaKnown RBP10.75□□□□□ -0.69
UPF3A-204ENST00000475218 PEF1Q9UBV8 284 aaKnown RBP10.75□□□□□ -0.69
UPF3A-204ENST00000475218 HMX3A6NHT5 357 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 CGB1A6NKQ9 187 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 SLC22A5O76082 557 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 FRMD6-AS1P0C7T7 363 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 MYOD1P15172 320 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 RPS19P39019 145 aaKnown RBP10.75□□□□□ -0.69
UPF3A-204ENST00000475218 RHOGP84095 191 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 MMD2Q8IY49 270 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 TTC9CQ8N5M4 171 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 OR9G4Q8NGQ1 327 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 TMEM167AQ8TBQ9 72 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 TCTEX1D2Q8WW35 142 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 PRELID3BQ9Y3B1 194 aa10.75□□□□□ -0.69
UPF3A-204ENST00000475218 MEIS3P1A6NDR6 274 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 BMPR1BO00238 502 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 TNFSF12O43508 249 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 KBTBD11O94819 623 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 PPYP01298 95 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 CSN3P07498 182 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 ADAMTSL5Q6ZMM2 481 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 ZNF66Q6ZN08 573 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 OR4S2Q8NH73 311 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 SECTM1Q8WVN6 248 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 NEURL2Q9BR09 285 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 THAP7Q9BT49 309 aaPredicted RBP10.74□□□□□ -0.69
UPF3A-204ENST00000475218 FUNDC2Q9BWH2 189 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 NAA50Q9GZZ1 169 aaKnown RBP10.74□□□□□ -0.69
UPF3A-204ENST00000475218 ANAPC10Q9UM13 185 aa10.74□□□□□ -0.69
UPF3A-204ENST00000475218 OR2A4O95047 310 aa10.73□□□□□ -0.69
UPF3A-204ENST00000475218 OR2A7Q96R45 310 aa10.73□□□□□ -0.69
UPF3A-204ENST00000475218 SPIN2AQ99865 258 aa10.73□□□□□ -0.69
UPF3A-204ENST00000475218 SPIN2BQ9BPZ2 258 aa10.73□□□□□ -0.69
UPF3A-204ENST00000475218 RSRP1Q9BUV0 290 aa10.73□□□□□ -0.69
UPF3A-204ENST00000475218 MRPS7Q9Y2R9 242 aaKnown RBP10.73□□□□□ -0.69
UPF3A-204ENST00000475218 XRCC3O43542 346 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 AIREO43918 545 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 ZNF735P0CB33 412 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 MECP2P51608 486 aaKnown RBP10.72□□□□□ -0.69
UPF3A-204ENST00000475218 ARPC4P59998 168 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 LSM3P62310 102 aaKnown RBP10.72□□□□□ -0.69
UPF3A-204ENST00000475218 EXOSC2Q13868 293 aaKnown RBP10.72□□□□□ -0.69
UPF3A-204ENST00000475218 MSMO1Q15800 293 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 FANCD2OSQ96PS1 177 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 ELOVL1Q9BW60 279 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 DIABLOQ9NR28 239 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.72□□□□□ -0.69
UPF3A-204ENST00000475218 IZUMO1RA6ND01 250 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 FAM223BA6NKX1 122 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 BOLA2-SMG1P6H3BVE0 249 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 MPPED1O15442 326 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 AREGP15514 252 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 EDN2P20800 178 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 CTF1Q16619 201 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 FAM223AQ8IWN6 122 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 OR5AP2Q8NGF4 316 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 GIMAP1Q8WWP7 306 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 C19orf73Q9NVV2 129 aa10.72□□□□□ -0.69
UPF3A-204ENST00000475218 TRAV3A0A0B4J244 114 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 SULT1C2O00338 296 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 TMEM127O75204 238 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 OR2J3O76001 311 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 IGHV4-30-4P0DP06 118 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 KLK9Q2XQG4 91 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 ZNF818PQ6ZRF7 136 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 SSX9Q7RTT3 188 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 SLC5A7Q9GZV3 580 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 SLC2A9Q9NRM0 540 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 SIGLEC8Q9NYZ4 499 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 KLK9Q9UKQ9 250 aa10.71□□□□□ -0.69
UPF3A-204ENST00000475218 NPIPB5A8MRT5 1133 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 CREBL2O60519 120 aaPredicted RBP10.7□□□□□ -0.7
UPF3A-204ENST00000475218 ACTL6BO94805 426 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 CRYGCP07315 174 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 RPL27AP46776 148 aaKnown RBP10.7□□□□□ -0.7
UPF3A-204ENST00000475218 TAS2R20P59543 309 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 FXYD4P59646 89 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 ATP5G2Q06055 141 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 C15orf32Q32M92 178 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 TIMM50Q3ZCQ8 353 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 UBE2NLQ5JXB2 153 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 OR4A47Q6IF82 309 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 SPAG16Q8N0X2 631 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 NECAP1Q8NC96 275 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 ZNF257Q9Y2Q1 563 aa10.7□□□□□ -0.7
UPF3A-204ENST00000475218 PPP5D1E7EU14 171 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms