RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PTPRSQ13332 1948 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 RGS12O14924 1447 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 C9orf84Q5VXU9 1444 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 IGHV3-64A0A075B6Q5 118 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 IGHV1-69-2A0A0G2JMI3 117 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 TMEM269A0A1B0GVZ9 245 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 A0A1B0GW54 56 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 SIGLEC16A6NMB1 481 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 A8MUN3 132 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 ZNF705FA8MVS1 300 aaPredicted RBP1□□□□□ -2.25
CCDC88A-212ENST00000474059 ACOX3O15254 700 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 KLRC4O43908 158 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 PGLYRP1O75594 196 aaPredicted RBP1□□□□□ -2.25
CCDC88A-212ENST00000474059 NSA2O95478 260 aaKnown RBP1□□□□□ -2.25
CCDC88A-212ENST00000474059 PRB1P04280 392 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 CCR7P32248 378 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 RPL28P46779 137 aaKnown RBP1□□□□□ -2.25
CCDC88A-212ENST00000474059 TPI1P60174 286 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 TMEM258P61165 79 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 NAA20P61599 178 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 RPL30P62888 115 aaKnown RBP1□□□□□ -2.25
CCDC88A-212ENST00000474059 EMX1Q04741 257 aaPredicted RBP1□□□□□ -2.25
CCDC88A-212ENST00000474059 SLC38A11Q08AI6 406 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 TNFAIP8L3Q5GJ75 292 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 LYZL1Q6UWQ5 148 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 SSX8Q7RTT4 187 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 GID4Q8IVV7 300 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 C10orf67Q8IYJ2 551 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 DEFB125Q8N687 156 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 RNF133Q8WVZ7 376 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 ASB17Q8WXJ9 295 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 TMA16Q96EY4 203 aaKnown RBP1□□□□□ -2.25
CCDC88A-212ENST00000474059 IMMP2LQ96T52 175 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 OR51I1Q9H343 314 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 CPAMD8Q8IZJ3 1885 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 ICE1Q9Y2F5 2266 aa1□□□□□ -2.25
CCDC88A-212ENST00000474059 DISP1Q96F81 1524 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 CACNA1GO43497 2377 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 A0A0J9YW62 118 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 H3BT86 120 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 ISG15P05161 165 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 LGALS1P09382 135 aaKnown RBP0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 DEFA4P12838 97 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 CCL5P13501 91 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 UCHL3P15374 230 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 PSMB8P28062 276 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 ALDH3A1P30838 453 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 MARCKSL1P49006 195 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 RELAQ04206 551 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 GLO1Q04760 184 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 AKR1C1Q04828 323 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 FABP9Q0Z7S8 132 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 BATFQ16520 125 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 COQ5Q5HYK3 327 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 SFXN4Q6P4A7 337 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 KTN1-AS1Q86SY8 53 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 PTH2Q96A98 100 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 VCX3BQ9H321 246 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 AK3Q9UIJ7 227 aa0.99□□□□□ -2.25
CCDC88A-212ENST00000474059 FLT4P35916 1363 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 TRAV38-1A0A0B4J264 116 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 TGOLN2O43493 480 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 CREBL2O60519 120 aaPredicted RBP0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 C1QCP02747 245 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 CALB1P05937 261 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 GPX1P07203 203 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 KRT7P08729 469 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 TFPTP0C1Z6 253 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 RAB13P51153 203 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 EMP1P54849 157 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 TCL1AP56279 114 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 RAB14P61106 215 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 MAGOHP61326 146 aaKnown RBP0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 ZNF705AQ6ZN79 300 aaPredicted RBP0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 COA5Q86WW8 74 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 TBC1D19Q8N5T2 526 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 OR51D1Q8NGF3 324 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 OR8B12Q8NGG6 310 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 OPTNQ96CV9 577 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 ARL5BQ96KC2 179 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 XAGE1AQ9HD64 81 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 TIMM9Q9Y5J7 89 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 SNAPC4Q5SXM2 1469 aa0.98□□□□□ -2.25
CCDC88A-212ENST00000474059 TRAV7A0A075B6U4 112 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 IGHV1-18A0A0C4DH31 117 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 INMT-MINDY4F8WBC2 141 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 H7C2G1 150 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 I3L521 148 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 LEPROTO15243 131 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 NIPSNAP2O75323 286 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 DCTN3O75935 186 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 NAPSAO96009 420 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 IFNA5P01569 189 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 PPBPP02775 128 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 HAAOP46952 286 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 CSN1S1P47710 185 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 AQP4P55087 323 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 RAB5BP61020 215 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 POLR2GP62487 172 aaKnown RBP eCLIP0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 TMEM155Q4W5P6 130 aa0.97□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 106.8 ms