RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 CEACAM18A8MTB9 384 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 ZNF865P0CJ78 1059 aaPredicted RBP7.69□□□□□ -1.18
COL6A3-210ENST00000473258 SRD5A2P31213 254 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 NABP1Q96AH0 204 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 SLIT3O75094 1523 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 H3BMG7 143 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 SYNGR3O43761 229 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 APOBEC3AP31941 199 aaPredicted RBP7.69□□□□□ -1.18
COL6A3-210ENST00000473258 CDKN1AP38936 164 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 ATP5L2Q7Z4Y8 100 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 RNASE7Q9H1E1 156 aaKnown RBP7.69□□□□□ -1.18
COL6A3-210ENST00000473258 TTC3P53804 2025 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 TRBV5-5A0A0J9YX44 114 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 C16orf52Q8NHV5 167 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 EAF1Q96JC9 268 aaPredicted RBP7.68□□□□□ -1.18
COL6A3-210ENST00000473258 TMEM243Q9BU79 118 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 RNF186Q9NXI6 227 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 HEATR1Q9H583 2144 aaKnown RBP7.68□□□□□ -1.18
COL6A3-210ENST00000473258 SLC25A20O43772 301 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 BVES-AS1Q5T3Y7 98 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 MRPS18CQ9Y3D5 142 aaKnown RBP7.68□□□□□ -1.18
COL6A3-210ENST00000473258 DNAJC25-GNG10A0A024R161 153 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 A0A096LPE4 126 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 A0A1W2PPZ6 126 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 PEX7O00628 323 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 RND2P52198 227 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 KHDC1LQ5JSQ8 128 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 LY6G6FQ5SQ64 297 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 C1orf100Q5SVJ3 147 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 NPCDR1Q9BY65 106 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 TRAV13-1A0A0B4J241 112 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 PRSS29PA6NIE9 313 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 VEGFBP49765 207 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 WDR31Q8NA23 367 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 OCC1Q8TAD7 63 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 DNAJC30Q96LL9 226 aa7.68□□□□□ -1.18
COL6A3-210ENST00000473258 FAM157BP0CG42 384 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 MAGEA5P43359 124 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 FGFRL1Q8N441 504 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 DRAM1Q8N682 238 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 PHLDA1Q8WV24 401 aaPredicted RBP7.67□□□□□ -1.18
COL6A3-210ENST00000473258 F5H768 121 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 TIMP3P35625 211 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 DIP2AQ14689 1571 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 FAM90A2PQ658T7 463 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 DICER1Q9UPY3 1922 aaKnown RBP7.67□□□□□ -1.18
COL6A3-210ENST00000473258 A0A0U1RQV1 116 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 SIVA1O15304 175 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 CEACAM5P06731 702 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 FAM106CPP0CH98 169 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 FAM106AQ4KMX7 169 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 STPG3Q8N7X2 389 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 RNF125Q96EQ8 232 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 FOXB1Q99853 325 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 OVOL2Q9BRP0 275 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 FBXL7Q9UJT9 491 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 NAPSAO96009 420 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 CGAP01215 116 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 RAC3P60763 192 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 Q0VG73 95 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 C19orf48Q6RUI8 117 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 PRSS41Q7RTY9 318 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 RNF183Q96D59 192 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 C20orf173Q96LM9 149 aa7.67□□□□□ -1.18
COL6A3-210ENST00000473258 LSM4Q9Y4Z0 139 aaKnown RBP7.67□□□□□ -1.18
COL6A3-210ENST00000473258 KIR2DL5BA0A0G2JN68 375 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 KIR2DL5BA0A0G2JPC4 375 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 TNFSF14O43557 240 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 PGLYRP1O75594 196 aaPredicted RBP7.66□□□□□ -1.18
COL6A3-210ENST00000473258 SP9P0CG40 484 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 KIR2DL5AQ8N109 375 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 SPEM1Q8N4L4 309 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 DEFB125Q8N687 156 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 LYPD6BQ8NI32 183 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 ZNF488Q96MN9 340 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 PRSS38A1L453 326 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 NPIPB4C9JG80 1138 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 G3V4G9 280 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 GZMHP20718 246 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 PIGYQ3MUY2 71 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 FAM219BQ5XKK7 198 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 TEX43Q6ZNM6 134 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 PHF7Q9BWX1 381 aaPredicted RBP7.66□□□□□ -1.18
COL6A3-210ENST00000473258 ZNF318Q5VUA4 2279 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 UBE2L6O14933 153 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 UNQ9370/PRO34162Q6UXP9 181 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 TMUB1Q9BVT8 246 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 IGLC7A0M8Q6 106 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 ATOX1O00244 68 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 ZG16O60844 167 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 SAXO1Q8IYX7 474 aa7.66□□□□□ -1.18
COL6A3-210ENST00000473258 LOC102723996A0A087X1L8 192 aa7.65□□□□□ -1.18
COL6A3-210ENST00000473258 FRG2CA6NGY1 282 aa7.65□□□□□ -1.18
COL6A3-210ENST00000473258 NXPH1P58417 271 aa7.65□□□□□ -1.18
COL6A3-210ENST00000473258 SRSF1Q07955 248 aaKnown RBP eCLIP7.65□□□□□ -1.18
COL6A3-210ENST00000473258 Q6ZVH6 145 aa7.65□□□□□ -1.18
COL6A3-210ENST00000473258 RPRMLQ8N4K4 120 aa7.65□□□□□ -1.18
COL6A3-210ENST00000473258 NPIPB3Q92617 1050 aa7.65□□□□□ -1.18
COL6A3-210ENST00000473258 LAMTOR3Q9UHA4 124 aa7.65□□□□□ -1.18
COL6A3-210ENST00000473258 MYO9BQ13459 2157 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms