RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 RHOVQ96L33 236 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 HIST1H2BNQ99877 126 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 HIST1H2BMQ99879 126 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 TIMM9Q9Y5J7 89 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 PTPRQQ9UMZ3 2332 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 A0A0G2JNJ9 132 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 CTXND1A0A1B0GTU2 59 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 GFRA3O60609 400 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 IGKV1-16P04430 117 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 NPPCP23582 126 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 ATP6V1FQ16864 119 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 CR1LQ2VPA4 569 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 ZNF383Q8NA42 475 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 PPP1R35Q8TAP8 253 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 ABHD5Q8WTS1 349 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 SSMEM1Q8WWF3 244 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 FAM122AQ96E09 287 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 ZNF251Q9BRH9 671 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 RNF7Q9UBF6 113 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 Q9UFV3 132 aa15.71■□□□□ 0.11
VIM-203ENST00000469543 KBTBD11-OT1A0A1B0GTJ5 212 aa15.71■□□□□ 0.1
VIM-203ENST00000469543 TREML4Q6UXN2 200 aa15.71■□□□□ 0.1
VIM-203ENST00000469543 DOLPP1Q86YN1 238 aa15.71■□□□□ 0.1
VIM-203ENST00000469543 DDB2Q92466 427 aa15.71■□□□□ 0.1
VIM-203ENST00000469543 PARLQ9H300 379 aa15.71■□□□□ 0.1
VIM-203ENST00000469543 MS4A5Q9H3V2 200 aa15.71■□□□□ 0.1
VIM-203ENST00000469543 NIT2Q9NQR4 276 aa15.71■□□□□ 0.1
VIM-203ENST00000469543 VWC2Q2TAL6 325 aa15.7■□□□□ 0.1
VIM-203ENST00000469543 TRAT1Q6PIZ9 186 aa15.7■□□□□ 0.1
VIM-203ENST00000469543 RND1Q92730 232 aa15.7■□□□□ 0.1
VIM-203ENST00000469543 DERL1Q9BUN8 251 aa15.7■□□□□ 0.1
VIM-203ENST00000469543 CEACAM8P31997 349 aaPredicted RBP15.7■□□□□ 0.1
VIM-203ENST00000469543 VDAC2P45880 294 aaPredicted RBP15.7■□□□□ 0.1
VIM-203ENST00000469543 PSMB3P49720 205 aa15.7■□□□□ 0.1
VIM-203ENST00000469543 MIC13Q5XKP0 118 aa15.7■□□□□ 0.1
VIM-203ENST00000469543 C1QL4Q86Z23 238 aa15.7■□□□□ 0.1
VIM-203ENST00000469543 C1orf159Q96HA4 380 aa15.7■□□□□ 0.1
VIM-203ENST00000469543 FAM210BQ96KR6 192 aa15.7■□□□□ 0.1
VIM-203ENST00000469543 GAFA1Q96PS6 74 aa15.7■□□□□ 0.1
VIM-203ENST00000469543 ELOVL1Q9BW60 279 aa15.7■□□□□ 0.1
VIM-203ENST00000469543 ACTR3CQ9C0K3 210 aaPredicted RBP15.7■□□□□ 0.1
VIM-203ENST00000469543 PGPEP1LA6NFU8 196 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 TCTEX1D1Q8N7M0 179 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 FRZBQ92765 325 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 P2RX4Q99571 388 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 SEBOXQ9HB31 216 aaPredicted RBP15.69■□□□□ 0.1
VIM-203ENST00000469543 GFOD1Q9NXC2 390 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 TANC2Q9HCD6 1990 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 CLDN34H7C241 214 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 SPCS3P61009 180 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 PRR30Q53SZ7 412 aaPredicted RBP15.69■□□□□ 0.1
VIM-203ENST00000469543 STUMQ69YW2 141 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 OR4A47Q6IF82 309 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 MOB3BQ86TA1 216 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 C1orf174Q8IYL3 243 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 FAM57AQ8TBR7 257 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 TCF19Q9Y242 345 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 ABCA1O95477 2261 aa15.69■□□□□ 0.1
VIM-203ENST00000469543 FCN3O75636 299 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 NDUFB7P17568 137 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 ATP5G3P48201 142 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 ERVK-16P61578 105 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 TMEM241Q24JQ0 296 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 MGST2Q99735 147 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 WDR83OSQ9Y284 106 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 TP53TG5Q9Y2B4 290 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 SRRM4A7MD48 611 aaKnown RBP15.68■□□□□ 0.1
VIM-203ENST00000469543 IFNA1P01562 189 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 CDC34P49427 236 aaPredicted RBP15.68■□□□□ 0.1
VIM-203ENST00000469543 RPL23P62829 140 aaKnown RBP15.68■□□□□ 0.1
VIM-203ENST00000469543 MRPS11P82912 194 aaKnown RBP15.68■□□□□ 0.1
VIM-203ENST00000469543 CDPF1Q6NVV7 123 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 ZCCHC14Q8WYQ9 949 aaKnown RBP15.68■□□□□ 0.1
VIM-203ENST00000469543 SIRT7Q9NRC8 400 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 IL19Q9UHD0 177 aa15.68■□□□□ 0.1
VIM-203ENST00000469543 TRGV10A0A0A0MS01 117 aa15.67■□□□□ 0.1
VIM-203ENST00000469543 CXorf65A6NEN9 183 aa15.67■□□□□ 0.1
VIM-203ENST00000469543 DPRXA6NFQ7 191 aa15.67■□□□□ 0.1
VIM-203ENST00000469543 CST9LP1Q5W188 147 aa15.67■□□□□ 0.1
VIM-203ENST00000469543 C16orf82Q7Z2V1 217 aa15.67■□□□□ 0.1
VIM-203ENST00000469543 SFXN3Q9BWM7 321 aa15.67■□□□□ 0.1
VIM-203ENST00000469543 SPTBN4Q9H254 2564 aa15.67■□□□□ 0.1
VIM-203ENST00000469543 COL12A1Q99715 3063 aa15.67■□□□□ 0.1
VIM-203ENST00000469543 NAV3Q8IVL0 2385 aa15.67■□□□□ 0.1
VIM-203ENST00000469543 TRGC1P0CF51 173 aa15.67■□□□□ 0.1
VIM-203ENST00000469543 RD3LP0DJH9 198 aa15.67■□□□□ 0.1
VIM-203ENST00000469543 PRSS46E5RG02 174 aa15.66■□□□□ 0.1
VIM-203ENST00000469543 CRYABP02511 175 aaKnown RBP15.66■□□□□ 0.1
VIM-203ENST00000469543 CCL3L1P16619 93 aa15.66■□□□□ 0.1
VIM-203ENST00000469543 EIF2S3P41091 472 aaKnown RBP15.66■□□□□ 0.1
VIM-203ENST00000469543 GATA4P43694 442 aa15.66■□□□□ 0.1
VIM-203ENST00000469543 SELENOVP59797 346 aa15.66■□□□□ 0.1
VIM-203ENST00000469543 PNRC1Q12796 327 aaPredicted RBP15.66■□□□□ 0.1
VIM-203ENST00000469543 MLANAQ16655 118 aa15.66■□□□□ 0.1
VIM-203ENST00000469543 ARSJQ5FYB0 599 aaPredicted RBP15.66■□□□□ 0.1
VIM-203ENST00000469543 FAM222BQ8WU58 562 aa15.66■□□□□ 0.1
VIM-203ENST00000469543 B4DEV8 164 aa15.66■□□□□ 0.1
VIM-203ENST00000469543 C11orf94C9JXX5 98 aa15.66■□□□□ 0.1
VIM-203ENST00000469543 KBTBD11O94819 623 aa15.66■□□□□ 0.1
VIM-203ENST00000469543 SOD3P08294 240 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms