RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 BAK1Q16611 211 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 VMA21Q3ZAQ7 101 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 C10orf99Q6UWK7 81 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 COMMD1Q8N668 190 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 POC5Q8NA72 575 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 OR51S1Q8NGJ8 323 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 OR13C8Q8NGS7 320 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 ZFAND1Q8TCF1 268 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 CD300LFQ8TDQ1 290 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 HRASLSQ9HDD0 168 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 SLC2A9Q9NRM0 540 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 TPSG1Q9NRR2 321 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 ZFP57Q9NU63 452 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 MCUBQ9NWR8 336 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 STARD9Q9P2P6 4700 aa9.31□□□□□ -0.92
SQSTM1-206ENST00000466342 HPRT1P00492 218 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 SAA1P0DJI8 122 aaPredicted RBP9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 F2RP25116 425 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 SLC6A1P30531 599 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 INPP1P49441 399 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 SLC35B1P78383 322 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 SURF2Q15527 256 aaPredicted RBP9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 TRIQKQ629K1 86 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 ZNF57Q68EA5 555 aaPredicted RBP9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 IDO2Q6ZQW0 420 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 ZNF329Q86UD4 541 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 TBC1D26Q86UD7 250 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 PPP1R27Q86WC6 154 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 STPG2Q8N412 459 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 TCTEX1D1Q8N7M0 179 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 LINC00482Q8N8I6 264 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 TEX45Q8NA69 505 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 MARCH1Q8TCQ1 289 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 S100ZQ8WXG8 99 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 NOL4LQ96MY1 436 aaPredicted RBP9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 MCRIP2Q9BUT9 160 aaKnown RBP9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 OR51J1Q9H342 316 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 PLEKHA2Q9HB19 425 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 SCP2D1Q9UJQ7 156 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 ZNF580Q9UK33 172 aa9.3□□□□□ -0.92
SQSTM1-206ENST00000466342 HERC2O95714 4834 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 FCN1O00602 326 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 ATP6V0E1O15342 81 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 CA2P00918 260 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 HRASP01112 189 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 IGF1P05019 195 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 CTSDP07339 412 aaPredicted RBP9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 IL7P13232 177 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 PI3P19957 117 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 PIGPP57054 158 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 TAS2R31P59538 309 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 CX3CL1P78423 397 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 NDPQ00604 133 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 KHDC1LQ5JSQ8 128 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 ZNF562Q6V9R5 426 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 CCDC71LQ8N9Z2 235 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 VSTM2AQ8TAG5 236 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 CLCC1Q96S66 551 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 AIFM2Q9BRQ8 373 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 GON7Q9BXV9 100 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 FAM212BQ9NTI7 297 aaPredicted RBP9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 COMMD9Q9P000 198 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 LINC00527Q9UJ94 153 aa9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 C14orf166Q9Y224 244 aaKnown RBP9.29□□□□□ -0.92
SQSTM1-206ENST00000466342 MPPED1O15442 326 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 CREBL2O60519 120 aaPredicted RBP9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 S1PR2O95136 353 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 VDAC1P21796 283 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 CRIP2P52943 208 aaPredicted RBP9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 SSBP2P81877 361 aaPredicted RBP9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 PJVKQ0ZLH3 352 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 POU2AF1Q16633 256 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 MRGPRG-AS1Q2M3A8 158 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 ZNF585BQ52M93 769 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 TEX38Q6PEX7 206 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 VKORC1L1Q8N0U8 176 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 PUSL1Q8N0Z8 303 aaKnown RBP9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 RHOVQ96L33 236 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 RCHY1Q96PM5 261 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 CCDC32Q9BV29 185 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 C5orf66Q9H5L9 145 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 PARP11Q9NR21 331 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 COPZ2Q9P299 210 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 GPR132Q9UNW8 380 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 FBXO7Q9Y3I1 522 aa9.28□□□□□ -0.92
SQSTM1-206ENST00000466342 TNCP24821 2201 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 NAP1L6A6NFF2 107 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 H0Y980 276 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 ARPC1BO15143 372 aaKnown RBP9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 KBTBD11O94819 623 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 OR2A4O95047 310 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 NQO2P16083 231 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 LPAR6P43657 344 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 RPL23AP62750 156 aaKnown RBP9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 CFHR3Q02985 330 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 FXYD3Q14802 87 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 PRSS8Q16651 343 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 ZFAND6Q6FIF0 208 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 OR4A47Q6IF82 309 aa9.27□□□□□ -0.93
SQSTM1-206ENST00000466342 ADAMTSL5Q6ZMM2 481 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms