RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SURF2Q15527 256 aaPredicted RBP13.88□□□□□ -0.19
COL7A1-205ENST00000465238 ZNF329Q86UD4 541 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 VKORC1L1Q8N0U8 176 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 CCDC71LQ8N9Z2 235 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 OR13C8Q8NGS7 320 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 RHOVQ96L33 236 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 PLEKHA2Q9HB19 425 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 HRASLSQ9HDD0 168 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 SLC2A8Q9NY64 477 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 COPZ2Q9P299 210 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 ZNF580Q9UK33 172 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 WSB1Q9Y6I7 421 aa13.88□□□□□ -0.19
COL7A1-205ENST00000465238 COL7A1Q02388 2944 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 MPPED1O15442 326 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 OR2A4O95047 310 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 CTSDP07339 412 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-205ENST00000465238 NQO2P16083 231 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 LPAR6P43657 344 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 PIGPP57054 158 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 TMEM267Q0VDI3 215 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-205ENST00000465238 BAK1Q16611 211 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 PRSS8Q16651 343 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 SSX9Q7RTT3 188 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 SCGB3A2Q96PL1 93 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 OR2A7Q96R45 310 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 COMMD9Q9P000 198 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 TNCP24821 2201 aa13.87□□□□□ -0.19
COL7A1-205ENST00000465238 TRAV41A0A0B4J266 112 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 ACTL6BO94805 426 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 S1PR2O95136 353 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 TEX38Q6PEX7 206 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 MMD2Q8IY49 270 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 COMMD1Q8N668 190 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 LINC00482Q8N8I6 264 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 GRPEL2Q8TAA5 225 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 S100ZQ8WXG8 99 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 ARPC1AQ92747 370 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 MRGPRFQ96AM1 343 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 SDHCQ99643 169 aaPredicted RBP13.86□□□□□ -0.19
COL7A1-205ENST00000465238 GPR61Q9BZJ8 451 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 AKIP1Q9NQ31 210 aa13.86□□□□□ -0.19
COL7A1-205ENST00000465238 FAM212BQ9NTI7 297 aaPredicted RBP13.86□□□□□ -0.19
COL7A1-205ENST00000465238 G3V318 75 aa13.85□□□□□ -0.19
COL7A1-205ENST00000465238 K7EIL1 84 aa13.85□□□□□ -0.19
COL7A1-205ENST00000465238 ERVK-16P61578 105 aa13.85□□□□□ -0.19
COL7A1-205ENST00000465238 NDPQ00604 133 aa13.85□□□□□ -0.19
COL7A1-205ENST00000465238 TNXAQ16473 311 aa13.85□□□□□ -0.19
COL7A1-205ENST00000465238 ECSCRQ19T08 205 aa13.85□□□□□ -0.19
COL7A1-205ENST00000465238 PUSL1Q8N0Z8 303 aaKnown RBP13.85□□□□□ -0.19
COL7A1-205ENST00000465238 DMBX1Q8NFW5 382 aa13.85□□□□□ -0.19
COL7A1-205ENST00000465238 TMEM167AQ8TBQ9 72 aa13.85□□□□□ -0.19
COL7A1-205ENST00000465238 FAM103A1Q9BTL3 118 aaKnown RBP13.85□□□□□ -0.19
COL7A1-205ENST00000465238 ZNF430Q9H8G1 570 aaPredicted RBP13.85□□□□□ -0.19
COL7A1-205ENST00000465238 GPR132Q9UNW8 380 aa13.85□□□□□ -0.19
COL7A1-205ENST00000465238 FBXO7Q9Y3I1 522 aa13.85□□□□□ -0.19
COL7A1-205ENST00000465238 NUBP2Q9Y5Y2 271 aa13.85□□□□□ -0.19
COL7A1-205ENST00000465238 ARPC1BO15143 372 aaKnown RBP13.84□□□□□ -0.19
COL7A1-205ENST00000465238 KBTBD11O94819 623 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 SERPINE2P07093 398 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 EGR2P11161 476 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-205ENST00000465238 IL7P13232 177 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 SLC6A1P30531 599 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 CRIP2P52943 208 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-205ENST00000465238 RPL23AP62750 156 aaKnown RBP13.84□□□□□ -0.19
COL7A1-205ENST00000465238 EGFEM1PQ0D2K5 195 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 POU2AF1Q16633 256 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 ZNF585BQ52M93 769 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 OR4A47Q6IF82 309 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 UNQ5815/PRO19632Q6UWF5 114 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 OR4A5Q8NH83 315 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 DPF1Q92782 380 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 RTBDNQ9BSG5 229 aaPredicted RBP13.84□□□□□ -0.19
COL7A1-205ENST00000465238 ZFP57Q9NU63 452 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 BET1LQ9NYM9 111 aa13.84□□□□□ -0.19
COL7A1-205ENST00000465238 TEX13DA0A0J9YY54 714 aaPredicted RBP13.83□□□□□ -0.2
COL7A1-205ENST00000465238 C3orf85A0A1B0GTC6 90 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 LINC00854A0A1B0GVQ3 168 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 NAP1L6A6NFF2 107 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 CENPXA8MT69 81 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 H0Y980 276 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 KRASP01116 189 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 IGHG4P01861 327 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 ELANEP08246 267 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 RPA2P15927 270 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 CFHR3Q02985 330 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 FOXE3Q13461 319 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 MRGPRG-AS1Q2M3A8 158 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 AKIRIN2Q53H80 203 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 CXorf66Q5JRM2 361 aaPredicted RBP13.83□□□□□ -0.2
COL7A1-205ENST00000465238 ETV3LQ6ZN32 361 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 MRPL41Q8IXM3 137 aaKnown RBP13.83□□□□□ -0.2
COL7A1-205ENST00000465238 LFNGQ8NES3 379 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 PHB2Q99623 299 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 C5orf66Q9H5L9 145 aa13.83□□□□□ -0.2
COL7A1-205ENST00000465238 MSGN1A6NI15 193 aa13.82□□□□□ -0.2
COL7A1-205ENST00000465238 MARCH11A6NNE9 402 aa13.82□□□□□ -0.2
COL7A1-205ENST00000465238 B3GALNT1O75752 331 aa13.82□□□□□ -0.2
COL7A1-205ENST00000465238 PPIFP30405 207 aaKnown RBP13.82□□□□□ -0.2
COL7A1-205ENST00000465238 MAS1LP35410 378 aa13.82□□□□□ -0.2
COL7A1-205ENST00000465238 KRTAP10-11P60412 298 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms