RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 FAM219AQ8IW50 185 aa8.42□□□□□ -1.06
UBR4-208ENST00000459947 FAM110DQ8TAY7 271 aaPredicted RBP8.42□□□□□ -1.06
UBR4-208ENST00000459947 ZMAT5Q9UDW3 170 aaKnown RBP8.42□□□□□ -1.06
UBR4-208ENST00000459947 ZNF735P0CB33 412 aa8.42□□□□□ -1.06
UBR4-208ENST00000459947 CD28P10747 220 aa8.42□□□□□ -1.06
UBR4-208ENST00000459947 MYCNOSP40205 109 aa8.42□□□□□ -1.06
UBR4-208ENST00000459947 CDX1P47902 265 aaPredicted RBP8.42□□□□□ -1.06
UBR4-208ENST00000459947 FBLN7Q53RD9 439 aa8.42□□□□□ -1.06
UBR4-208ENST00000459947 ZNF57Q68EA5 555 aaPredicted RBP8.42□□□□□ -1.06
UBR4-208ENST00000459947 TBC1D26Q86UD7 250 aa8.42□□□□□ -1.06
UBR4-208ENST00000459947 OR1L6Q8NGR2 347 aa8.42□□□□□ -1.06
UBR4-208ENST00000459947 TRIM63Q969Q1 353 aa8.42□□□□□ -1.06
UBR4-208ENST00000459947 MCRIP2Q9BUT9 160 aaKnown RBP8.42□□□□□ -1.06
UBR4-208ENST00000459947 HRASLSQ9HDD0 168 aa8.42□□□□□ -1.06
UBR4-208ENST00000459947 VSIG4Q9Y279 399 aa8.42□□□□□ -1.06
UBR4-208ENST00000459947 NUDT19A8MXV4 375 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 UPK2O00526 184 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 PPP5CP53041 499 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 PIGPP57054 158 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 KHDC1LQ5JSQ8 128 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 Q6ZS46 218 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 SGPP2Q8IWX5 399 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 OR13C8Q8NGS7 320 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 IL22RA2Q969J5 263 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 MCUBQ9NWR8 336 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 ZNF257Q9Y2Q1 563 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 SH2D7A6NKC9 451 aaPredicted RBP8.41□□□□□ -1.06
UBR4-208ENST00000459947 TNFSF12O43508 249 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 DUS4LO95620 317 aaKnown RBP8.41□□□□□ -1.06
UBR4-208ENST00000459947 RUNX1Q01196 453 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 PHLDA2Q53GA4 152 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 IDO2Q6ZQW0 420 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 SRSF12Q8WXF0 261 aaKnown RBP8.41□□□□□ -1.06
UBR4-208ENST00000459947 UBE2E2Q96LR5 201 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 COMMD5Q9GZQ3 224 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 IGLV1-40P01703 118 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 HLA-GP17693 338 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 ECSCRQ19T08 205 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 C19orf54Q5BKX5 351 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 USMG5Q96IX5 58 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 RITA1Q96K30 269 aa8.41□□□□□ -1.06
UBR4-208ENST00000459947 CITED2Q99967 270 aaPredicted RBP8.41□□□□□ -1.06
UBR4-208ENST00000459947 TEX13DA0A0J9YY54 714 aaPredicted RBP8.4□□□□□ -1.06
UBR4-208ENST00000459947 OR9G9P0C7N8 305 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 OR2B11Q5JQS5 317 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 OR4A47Q6IF82 309 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 ZNF695Q8IW36 515 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 OR1L8Q8NGR8 309 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 GRPEL2Q8TAA5 225 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 MYOZ3Q8TDC0 251 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 CLCC1Q96S66 551 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 NAA60Q9H7X0 242 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 GPR132Q9UNW8 380 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 DUXBA0A1W2PPF3 345 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 PPIFP30405 207 aaKnown RBP8.4□□□□□ -1.06
UBR4-208ENST00000459947 KRTAP10-3P60369 221 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 GNB1P62873 340 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 ZNF79Q15937 498 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 TREML4Q6UXN2 200 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 OR5B3Q8NH48 314 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 C4orf3Q8WVX3 66 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 ZNF430Q9H8G1 570 aaPredicted RBP8.4□□□□□ -1.06
UBR4-208ENST00000459947 TMEM140Q9NV12 185 aa8.4□□□□□ -1.06
UBR4-208ENST00000459947 C3orf85A0A1B0GTC6 90 aa8.4□□□□□ -1.07
UBR4-208ENST00000459947 PF4P02776 101 aa8.4□□□□□ -1.07
UBR4-208ENST00000459947 ZNF846Q147U1 533 aa8.4□□□□□ -1.07
UBR4-208ENST00000459947 H2BFWTQ7Z2G1 175 aa8.4□□□□□ -1.07
UBR4-208ENST00000459947 OR51S1Q8NGJ8 323 aa8.4□□□□□ -1.07
UBR4-208ENST00000459947 TMEM56Q96MV1 263 aa8.4□□□□□ -1.07
UBR4-208ENST00000459947 NOL4LQ96MY1 436 aaPredicted RBP8.4□□□□□ -1.07
UBR4-208ENST00000459947 ATRQ13535 2644 aa8.4□□□□□ -1.07
UBR4-208ENST00000459947 A0A1W2PN81 502 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 FAM223BA6NKX1 122 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 UCP1P25874 307 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 PSMB8P28062 276 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 CHRNA7P36544 502 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 FOXB2Q5VYV0 432 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 FAM223AQ8IWN6 122 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 MARCH1Q8TCQ1 289 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 NIPBLQ6KC79 2804 aaeCLIP8.39□□□□□ -1.072e-11■■□□□ 13
UBR4-208ENST00000459947 MARCH11A6NNE9 402 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 NPIPB5A8MRT5 1133 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 S1PR2O95136 353 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 RBMS2Q15434 407 aaKnown RBP8.39□□□□□ -1.07
UBR4-208ENST00000459947 RNASE11Q8TAA1 199 aaKnown RBP8.39□□□□□ -1.07
UBR4-208ENST00000459947 RRNAD1Q96FB5 475 aaKnown RBP8.39□□□□□ -1.07
UBR4-208ENST00000459947 GALNT14Q96FL9 552 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 C13orf42A0A1B0GVH6 325 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 SRRM4A7MD48 611 aaKnown RBP8.39□□□□□ -1.07
UBR4-208ENST00000459947 IL6RP08887 468 aaPredicted RBP8.39□□□□□ -1.07
UBR4-208ENST00000459947 TRIM16LQ309B1 348 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 NSUN5P1Q3KNT7 163 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 OR4A16Q8NH70 328 aa8.39□□□□□ -1.07
UBR4-208ENST00000459947 TTC9CQ8N5M4 171 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 TAF15Q92804 592 aaKnown RBP eCLIP8.38□□□□□ -1.07
UBR4-208ENST00000459947 PDCD10Q9BUL8 212 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 THYN1Q9P016 225 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 WSB1Q9Y6I7 421 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 CRYM-AS1A6NIL9 109 aa8.38□□□□□ -1.07
UBR4-208ENST00000459947 FCN1O00602 326 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms