RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 SIRPDQ9H106 197 aa11.54□□□□□ -0.56
USP39-207ENST00000450066 NUP50Q9UKX7 468 aa11.54□□□□□ -0.56
USP39-207ENST00000450066 PRNDQ9UKY0 176 aa11.54□□□□□ -0.56
USP39-207ENST00000450066 POLR3KQ9Y2Y1 108 aaPredicted RBP11.54□□□□□ -0.56
USP39-207ENST00000450066 IGHV1-3A0A0C4DH29 117 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 ODF3BA8MYP8 253 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 J3QKU1 62 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 ARG1P05089 322 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 SAA1P0DJI8 122 aaPredicted RBP11.53□□□□□ -0.56
USP39-207ENST00000450066 HTR1DP28221 377 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 DSCR9P59020 149 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 TMEM267Q0VDI3 215 aaPredicted RBP11.53□□□□□ -0.56
USP39-207ENST00000450066 CLINT1Q14677 625 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 FAM74A1Q5RGS3 127 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 TMEM14EPQ6UXP3 125 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 VMO1Q7Z5L0 202 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 STPG2Q8N412 459 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 OR1S2Q8NGQ3 325 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 TMED6Q8WW62 240 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 PERPQ96FX8 193 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 MMP26Q9NRE1 261 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 MAP1AP78559 2803 aaPredicted RBP11.53□□□□□ -0.56
USP39-207ENST00000450066 LEUTXA8MZ59 168 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 UPK2O00526 184 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 METTL15P1P0C7V9 234 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 ZNF787Q6DD87 383 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 PDZD9Q8IXQ8 264 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 GINS3Q9BRX5 216 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 MS4A7Q9GZW8 240 aaPredicted RBP11.53□□□□□ -0.56
USP39-207ENST00000450066 DPM3Q9P2X0 92 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 ZNF257Q9Y2Q1 563 aa11.53□□□□□ -0.56
USP39-207ENST00000450066 STRAPQ9Y3F4 350 aaKnown RBP11.53□□□□□ -0.56
USP39-207ENST00000450066 IGHV4-61A0A0C4DH41 118 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 CEACAM3P40198 252 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 LGALS7P47929 136 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 HSPE1P61604 102 aaKnown RBP11.52□□□□□ -0.57
USP39-207ENST00000450066 RPS16P62249 146 aaKnown RBP11.52□□□□□ -0.57
USP39-207ENST00000450066 HBG1P69891 147 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 HBG2P69892 147 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 SPINK9Q5DT21 86 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 TPTE2P1Q5T6R2 138 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 VSTM2AQ8TAG5 236 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 CLCC1Q96S66 551 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 ATP5SQ99766 215 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 FKBP11Q9NYL4 201 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 TCF19Q9Y242 345 aa11.52□□□□□ -0.57
USP39-207ENST00000450066 DFFBO76075 338 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 KBTBD11O94819 623 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 COL8A1P27658 744 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 KLRD1Q13241 179 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 LDLRAD2Q5SZI1 272 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 MOB3BQ86TA1 216 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 OR4A5Q8NH83 315 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 LRRC20Q8TCA0 184 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 OR4C12Q96R67 309 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 TSNAXQ99598 290 aaKnown RBP11.51□□□□□ -0.57
USP39-207ENST00000450066 OR51B2Q9Y5P1 312 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 IGHV4-30-2A0A087WSY4 118 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 FAM157AC9JC47 383 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 RNASEK-C17orf49H0YIS7 233 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 TOX4O94842 621 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 IGLV2-23P01705 113 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 FGF2P09038 288 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 HOXB4P17483 251 aaPredicted RBP11.51□□□□□ -0.57
USP39-207ENST00000450066 VDAC2P45880 294 aaPredicted RBP11.51□□□□□ -0.57
USP39-207ENST00000450066 HAPLN4Q86UW8 402 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 RNF141Q8WVD5 230 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 HIPK2Q9H2X6 1198 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 AUP1Q9Y679 476 aa11.51□□□□□ -0.57
USP39-207ENST00000450066 CSMD2Q7Z408 3487 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 IGHV3-72A0A0B4J1Y9 119 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 A0A1W2PPI3 338 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 FGF16O43320 207 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 SEC11BP0C7V7 166 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 USF1P22415 310 aaPredicted RBP11.5□□□□□ -0.57
USP39-207ENST00000450066 DVL1P1P54792 670 aaPredicted RBP11.5□□□□□ -0.57
USP39-207ENST00000450066 RPP30P78346 268 aaKnown RBP11.5□□□□□ -0.57
USP39-207ENST00000450066 ARL16Q0P5N6 197 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 TMEM167AQ8TBQ9 72 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 HEYLQ9NQ87 328 aaPredicted RBP11.5□□□□□ -0.57
USP39-207ENST00000450066 FBXO24O75426 580 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 SCAF4O95104 1147 aaKnown RBP11.5□□□□□ -0.57
USP39-207ENST00000450066 FAM157CP0CG43 387 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 SPP1P10451 314 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 VMA21Q3ZAQ7 101 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 OR5B3Q8NH48 314 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 MED9Q9NWA0 146 aa11.5□□□□□ -0.57
USP39-207ENST00000450066 HOXA1P49639 335 aaPredicted RBP11.49□□□□□ -0.57
USP39-207ENST00000450066 RPL8P62917 257 aaKnown RBP11.49□□□□□ -0.57
USP39-207ENST00000450066 PRCDQ00LT1 54 aa11.49□□□□□ -0.57
USP39-207ENST00000450066 PTPN13Q12923 2485 aa11.49□□□□□ -0.57
USP39-207ENST00000450066 MINOS1Q5TGZ0 78 aa11.49□□□□□ -0.57
USP39-207ENST00000450066 HSD17B11Q8NBQ5 300 aa11.49□□□□□ -0.57
USP39-207ENST00000450066 RITA1Q96K30 269 aa11.49□□□□□ -0.57
USP39-207ENST00000450066 MINOS1-NBL1R4GNA1 71 aa11.49□□□□□ -0.57
USP39-207ENST00000450066 MED13LQ71F56 2210 aa11.49□□□□□ -0.57
USP39-207ENST00000450066 HELZ2Q9BYK8 2649 aaKnown RBP11.48□□□□□ -0.57
USP39-207ENST00000450066 TEX50A0A1B0GTY4 177 aa11.48□□□□□ -0.57
USP39-207ENST00000450066 PMS2P5A8MQ11 134 aa11.48□□□□□ -0.57
USP39-207ENST00000450066 UBE2E1P51965 193 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms