RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 KLF14Q8TD94 323 aaPredicted RBP6.64□□□□□ -1.35
NEDD9-204ENST00000448183 TUBA4BQ9H853 241 aa6.64□□□□□ -1.35
NEDD9-204ENST00000448183 LPAR2Q9HBW0 351 aa6.64□□□□□ -1.35
NEDD9-204ENST00000448183 IL36BQ9NZH7 164 aa6.64□□□□□ -1.35
NEDD9-204ENST00000448183 IFNL4K9M1U5 179 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 THY1P04216 161 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 RAB9AP51151 201 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 CRYBA2P53672 197 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 FOXA3P55318 350 aaPredicted RBP6.63□□□□□ -1.35
NEDD9-204ENST00000448183 ARF6P62330 175 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 PRSS8Q16651 343 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 UNQ5815/PRO19632Q6UWF5 114 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 ZCCHC14Q8WYQ9 949 aaKnown RBP6.63□□□□□ -1.35
NEDD9-204ENST00000448183 TM2D1Q9BX74 207 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 NPCDR1Q9BY65 106 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 RTN4RQ9BZR6 473 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 CGB1A6NKQ9 187 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 J3QW42 95 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 IL4P05112 153 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 SMIM13P0DJ93 91 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 CIRBPQ14011 172 aaKnown RBP6.63□□□□□ -1.35
NEDD9-204ENST00000448183 RNFT1Q5M7Z0 435 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 OR9G1Q8NH87 305 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 TMEM171Q8WVE6 324 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 TMEM186Q96B77 213 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 ZNF414Q96IQ9 312 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 MRPL13Q9BYD1 178 aaKnown RBP6.63□□□□□ -1.35
NEDD9-204ENST00000448183 ZNFX1Q9P2E3 1918 aaKnown RBP6.63□□□□□ -1.35
NEDD9-204ENST00000448183 H3BTX0 84 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 WNT9BO14905 357 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 IL6RP08887 468 aaPredicted RBP6.63□□□□□ -1.35
NEDD9-204ENST00000448183 PF4V1P10720 104 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 TFPI2P48307 235 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 TBL2Q9Y4P3 447 aaKnown RBP6.63□□□□□ -1.35
NEDD9-204ENST00000448183 MDC1Q14676 2089 aaKnown RBP6.63□□□□□ -1.35
NEDD9-204ENST00000448183 TAF1LQ8IZX4 1826 aa6.63□□□□□ -1.35
NEDD9-204ENST00000448183 hCG_38984A0A1B0GV85 526 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 IGKV3-11P04433 115 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 SAPCD1Q5SSQ6 148 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 VKORC1L1Q8N0U8 176 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 COPS9Q8WXC6 57 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 WNT10AQ9GZT5 417 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 KLK15Q9H2R5 256 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 TRAV14DV4A0A0A6YYC5 116 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 EMP1P54849 157 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 PAPPA-AS1Q5QFB9 102 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 DMRTA1Q5VZB9 504 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 PMS2CLQ68D20 193 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 C1QL2Q7Z5L3 287 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 LEAP2Q969E1 77 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 C14orf144Q96I85 54 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 PLSCR2Q9NRY7 297 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 TRIP12Q14669 1992 aaPredicted RBP6.62□□□□□ -1.35
NEDD9-204ENST00000448183 LINC00587B1AMM8 73 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 DLX6P56179 175 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 DDB2Q92466 427 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 TMEM54Q969K7 222 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 KIR2DL4Q99706 377 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 SRXN1Q9BYN0 137 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 SDF2L1Q9HCN8 221 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 TRBV20OR9-2A0A075B6H5 130 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 TRAV9-1A0A075B6T8 112 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 SPAARA0A1B0GVQ0 90 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 CCL21O00585 134 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 RELQ04864 619 aaPredicted RBP6.62□□□□□ -1.35
NEDD9-204ENST00000448183 TTC9CQ8N5M4 171 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 OR5P3Q8WZ94 311 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 GPR82Q96P67 336 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 ABCA1O95477 2261 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 SCN4AP35499 1836 aa6.62□□□□□ -1.35
NEDD9-204ENST00000448183 SLC17A3O00476 420 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 PCSK4Q6UW60 755 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 NIT1Q86X76 327 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 RTBDNQ9BSG5 229 aaPredicted RBP6.61□□□□□ -1.35
NEDD9-204ENST00000448183 PRDM13Q9H4Q3 707 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 PIKFYVEQ9Y2I7 2098 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 LOC101059948A0A1B0GTJ6 334 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 A0A1B0GV72 72 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 REG1AP05451 166 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 CTSBP07858 339 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 HIST1H1AQ02539 215 aaPredicted RBP6.61□□□□□ -1.35
NEDD9-204ENST00000448183 SLC25A45Q8N413 288 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 PRR7Q8TB68 274 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 NEUROG1Q92886 237 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 HEATR5BQ9P2D3 2071 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 TRAV8-6A0A0B4J262 113 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 NBEAP1P0C6P0 100 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 PSMG4Q5JS54 123 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 CYB5R2Q6BCY4 276 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 LINC00305Q7Z4B0 112 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 CLDND2Q8NHS1 167 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 IMMP2LQ96T52 175 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 EP300Q09472 2414 aaPredicted RBP6.61□□□□□ -1.35
NEDD9-204ENST00000448183 A0A1B0GTI1 187 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 CGAP01215 116 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 IGHV3-48P01763 117 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 TBR1Q16650 682 aa6.61□□□□□ -1.35
NEDD9-204ENST00000448183 SCARF2Q96GP6 870 aaPredicted RBP6.61□□□□□ -1.35
NEDD9-204ENST00000448183 IGKV3D-15A0A087WSY6 115 aa6.6□□□□□ -1.35
NEDD9-204ENST00000448183 UBE2L6O14933 153 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms