RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SNRNP70P08621 437 aaKnown RBP13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 FBP1P09467 338 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 OR9G9P0C7N8 305 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 FAM106CPP0CH98 169 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 PAX6P26367 422 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 UBE2KP61086 200 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 HABP2Q14520 560 aaPredicted RBP13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 PRSS54Q6PEW0 395 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 DYNAPQ8N1N2 210 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 FAM71E2Q8N5Q1 922 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 OR4A5Q8NH83 315 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 MAGT1Q9H0U3 335 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 BET1LQ9NYM9 111 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 NSG2Q9Y328 171 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 TRAV14DV4A0A0A6YYC5 116 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 SLC25A17O43808 307 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 SSSCA1O60232 199 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 KBTBD11O94819 623 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 SPDEFO95238 335 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 AVPP01185 164 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 IFNA17P01571 189 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 SLC25A4P12235 298 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 TMEM11P17152 192 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 NKX2-5P52952 324 aaPredicted RBP13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 IL15RAQ13261 267 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 HNF4GQ14541 408 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 MMDQ15546 238 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 KRTAP21-3Q3LHN1 58 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 Q5BKY6 102 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 CXorf66Q5JRM2 361 aaPredicted RBP13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 Q6ZRM9 215 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 ZNF546Q86UE3 836 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 INO80EQ8NBZ0 244 aaPredicted RBP13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 GRPEL2Q8TAA5 225 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 ZC4H2Q9NQZ6 224 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 FKBP11Q9NYL4 201 aa13.77□□□□□ -0.21
CCDC28B-202ENST00000421922 FLNAP21333 2647 aaKnown RBP13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 A0A0U1RQK1 487 aa13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 C15orf61A6NNL5 157 aa13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 SRRM4A7MD48 611 aaKnown RBP13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 CEBPZOSA8MTT3 80 aa13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 E5RGE8 158 aa13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 UPK2O00526 184 aa13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 ARPC5O15511 151 aa13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 PITX3O75364 302 aa13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 DEDDO75618 318 aa13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 ACTL6BO94805 426 aa13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 KLF17Q5JT82 389 aaPredicted RBP13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 PUSL1Q8N0Z8 303 aaKnown RBP13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 TEX45Q8NA69 505 aa13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 RBMXL1Q96E39 390 aaKnown RBP13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 QTRT1Q9BXR0 403 aaKnown RBP13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 ENY2Q9NPA8 101 aa13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 METTL1Q9UBP6 276 aaKnown RBP13.76□□□□□ -0.21
CCDC28B-202ENST00000421922 G3V3Q6 166 aa13.75□□□□□ -0.21
CCDC28B-202ENST00000421922 CD24P25063 80 aa13.75□□□□□ -0.21
CCDC28B-202ENST00000421922 POLR2GP62487 172 aaKnown RBP eCLIP13.75□□□□□ -0.21
CCDC28B-202ENST00000421922 RELBQ01201 579 aa13.75□□□□□ -0.21
CCDC28B-202ENST00000421922 ID3Q02535 119 aa13.75□□□□□ -0.21
CCDC28B-202ENST00000421922 TNFRSF9Q07011 255 aa13.75□□□□□ -0.21
CCDC28B-202ENST00000421922 EAF1Q96JC9 268 aaPredicted RBP13.75□□□□□ -0.21
CCDC28B-202ENST00000421922 COMMD5Q9GZQ3 224 aa13.75□□□□□ -0.21
CCDC28B-202ENST00000421922 OR5AC2Q9NZP5 309 aa13.75□□□□□ -0.21
CCDC28B-202ENST00000421922 C1RLQ9NZP8 487 aa13.75□□□□□ -0.21
CCDC28B-202ENST00000421922 OR51B2Q9Y5P1 312 aa13.75□□□□□ -0.21
CCDC28B-202ENST00000421922 HMSDA8MTL9 139 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 NBR2O15453 112 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 SYNGR2O43760 224 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 CD5LO43866 347 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 GPR137BO60478 399 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 IGLV2-23P01705 113 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 FGF2P09038 288 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 C4BPBP20851 252 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 SPCS3P61009 180 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 RPL23AP62750 156 aaKnown RBP13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 RPL8P62917 257 aaKnown RBP13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 PSG5Q15238 335 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 LRRC75BQ2VPJ9 315 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 THNSL2Q86YJ6 484 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 MMD2Q8IY49 270 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 OR11H4Q8NGC9 324 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 TMEM167AQ8TBQ9 72 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 CIB3Q96Q77 187 aaPredicted RBP13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 RAB40CQ96S21 281 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 HINT2Q9BX68 163 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 HSPB7Q9UBY9 170 aa13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 FOXA2Q9Y261 457 aaPredicted RBP13.74□□□□□ -0.21
CCDC28B-202ENST00000421922 TRAV3A0A0B4J244 114 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 NCBP2LA6PVI3 153 aaKnown RBP13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 HNF1AP20823 631 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 HOXA1P49639 335 aaPredicted RBP13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 ZNF429Q86V71 674 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 OR52E5Q8NH55 327 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 AJUBAQ96IF1 538 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 MFFQ9GZY8 342 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 MEGF9Q9H1U4 602 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 RBKSQ9H477 322 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 YAE1D1Q9NRH1 226 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 VPS13CQ709C8 3753 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 RRHO14718 337 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms