RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TIMP4Q99727 224 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 TRBV20OR9-2A0A075B6H5 130 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 OOSP1A8MZH6 123 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 PRKNO60260 465 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-203ENST00000409050 NBEAP1P0C6P0 100 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 CRYBB3P26998 211 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 IFITM2Q01629 132 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 ABHD12Q8N2K0 398 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 ITLN1Q8WWA0 313 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 MBD3L1Q8WWY6 194 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 C1QTNF5Q9BXJ0 243 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 WNT5BQ9H1J7 359 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 C11orf68Q9H3H3 251 aaKnown RBP5.2□□□□□ -1.58
SCN1A-203ENST00000409050 FZR1Q9UM11 496 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 LINC00312Q9Y6C7 94 aa5.2□□□□□ -1.58
SCN1A-203ENST00000409050 SIPA1L3O60292 1781 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-203ENST00000409050 IGLV3-32A0A0A0MS00 114 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-203ENST00000409050 FGF16O43320 207 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 PRSS2P07478 247 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 GFRA1P56159 465 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 H2BFSP57053 126 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 TRBV24-1A0A075B6N3 115 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 LOC105371242A0A075B767 164 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 A0A1W2PQF6 199 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 YPEL1O60688 119 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 NDUFS6O75380 124 aaKnown RBP5.19□□□□□ -1.58
SCN1A-203ENST00000409050 STARD6P59095 220 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 FUT5Q11128 374 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 COL9A2Q14055 689 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-203ENST00000409050 ZNF324BQ6AW86 544 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-203ENST00000409050 PLPPR2Q96GM1 343 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 YPEL2Q96QA6 119 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 GDF15Q99988 308 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 TNFRSF18Q9Y5U5 241 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-203ENST00000409050 TSPAN13O95857 204 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 IGKV3-11P04433 115 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 FCGR2BP31994 310 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-203ENST00000409050 SPEM2Q0P670 501 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 ARPC1AQ92747 370 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 CCL13Q99616 98 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 R3HDMLQ9H3Y0 253 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 DPM3Q9P2X0 92 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 FER1L6Q2WGJ9 1857 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 FNDC10F2Z333 226 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 COX6B1P14854 86 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 PEMTQ9UBM1 199 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 A0A1W2PR80 420 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 SLC25A20O43772 301 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 ZG16O60844 167 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 APOBEC3AP31941 199 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-203ENST00000409050 HSD52Q0P140 79 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 ASPHD2Q6ICH7 369 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 LINC00114Q6XXX2 140 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 KIR3DL3Q8N743 410 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 TEX45Q8NA69 505 aa5.19□□□□□ -1.58
SCN1A-203ENST00000409050 KLF14Q8TD94 323 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-203ENST00000409050 HDHD3Q9BSH5 251 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-203ENST00000409050 MRPL16Q9NX20 251 aaKnown RBP5.19□□□□□ -1.58
SCN1A-203ENST00000409050 TRAV9-2A0A087WT02 112 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 LOC389332A0A1B0GUA5 103 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 CCL21O00585 134 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 HOXB3P14651 431 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-203ENST00000409050 IGFBP3P17936 291 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-203ENST00000409050 IGFBP6P24592 240 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-203ENST00000409050 LAMTOR2Q9Y2Q5 125 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 IGKV1D-42A0A075B6H8 117 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 TRAV39A0A0B4J263 110 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 IGLV3-19P01714 112 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 PF4V1P10720 104 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 CEACAM1P13688 526 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 ZXDCQ2QGD7 858 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-203ENST00000409050 ZNF818PQ6ZRF7 136 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 RGP1Q92546 391 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-203ENST00000409050 SSBP4Q9BWG4 385 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-203ENST00000409050 ZNF257Q9Y2Q1 563 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 C9JCJ5 164 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 RRHO14718 337 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 CEACAM4O75871 244 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 PCP4P48539 62 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 FXYD3Q14802 87 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 C9orf50Q5SZB4 431 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 ACP7Q6ZNF0 438 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 DTX2Q86UW9 622 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 ZNF784Q8NCA9 323 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-203ENST00000409050 OR11H4Q8NGC9 324 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 OR2K2Q8NGT1 345 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 SCGB3A1Q96QR1 104 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 JMJD8Q96S16 334 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 RPRMQ9NS64 109 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 PRR13Q9NZ81 148 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 STRCQ7RTU9 1775 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 RGPD4Q7Z3J3 1758 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 TRGV11A0A075B6L2 103 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 KBTBD11-OT1A0A1B0GTJ5 212 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 FABP5P3A8MUU1 101 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 CNTFRP26992 372 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 GPR183P32249 361 aa5.18□□□□□ -1.58
SCN1A-203ENST00000409050 SRSF1Q07955 248 aaKnown RBP eCLIP5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms